Factsheet for Os02t0143400-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0783700-01
Os06t0683400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	Os01t0783700-01	AT4G27280.1	21798944
AT2G24400.1	Os06t0683400-02	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G104500.1	Wheat	cytosol	78.46	81.6
TraesCS6B01G143500.1	Wheat	cytosol	80.0	81.25
TraesCS6A01G115700.1	Wheat	cytosol	80.0	81.25
EES06266	Sorghum	cytosol, nucleus, plastid	76.15	79.84
Zm00001d053884_P001	Maize	cytosol	79.23	78.03
Os06t0701900-00	Rice	mitochondrion	69.23	45.92
KRH46980	Soybean	cytosol	46.92	42.96
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	53.85	40.46
KRH52631	Soybean	plastid	53.08	40.35
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	54.62	40.11
KRH44681	Soybean	plastid	47.69	40.0
Os04t0608300-01	Rice	cytosol	53.85	39.77
VIT_04s0008g02800.t01	Wine grape	plastid	49.23	39.51
KRH61972	Soybean	plastid	51.54	39.18
KRH16185	Soybean	nucleus	53.08	38.98
KRH04818	Soybean	cytosol	50.0	37.57
PGSC0003DMT400023703	Potato	nucleus	46.92	34.86
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	47.69	34.83
CDY20311	Canola	cytosol, mitochondrion, nucleus	45.38	33.71
CDY46148	Canola	cytosol, mitochondrion, nucleus	45.38	33.52
Bra032097.1-P	Field mustard	cytosol, mitochondrion, nucleus	44.62	32.77
Solyc03g124020.1.1	Tomato	nucleus	46.92	32.45
CDY36449	Canola	cytosol, nucleus, plastid	45.38	32.42
AT4G31320.1	Thale cress	cytosol	46.92	32.28
CDY13423	Canola	nucleus	43.85	32.02
CDX68733	Canola	nucleus	46.15	31.91
Bra011258.1-P	Field mustard	nucleus	46.15	31.91
CDY28255	Canola	nucleus	46.15	31.91
Bra024013.1-P	Field mustard	nucleus	46.15	31.58
Os02t0143300-00	Rice	mitochondrion	29.23	31.15
CDX72302	Canola	nucleus	46.15	28.71
Os09t0437400-00	Rice	cytosol	40.77	27.89

Protein Annotations

EnsemblPlants:Os02t0143400-00	EnsemblPlantsGene:Os02g0143400	EntrezGene:4328277	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF113	PFAM:PF02519	ProteinID:BAF07783.2	ProteinID:BAS76944.1
ProteinID:EAZ21715.1	RefSeq:XP_015623600.1	SEG:seg	UniParc:UPI0000F172CB	UniProt:Q0E405	MapMan:35.2

Description

SMALL AUXIN-UP RNA 5Similar to small auxin up RNA1. (Os02t0143400-00)

Coordinates

chr2:-:2408927..2409319

Molecular Weight (calculated)

14632.7 Da

IEP (calculated)

8.988

GRAVY (calculated)

-0.400

Length

130 amino acids

Sequence
(BLAST)

001: MGEQGGRASS NKIRDIVRLH QLLKRWKRAA LAPKAGKNNN GGGASVPKGF FAVCVGEEMR RFVIPTEYLG HWAFEQLLRK AEEEFGFQHE GALRIPCDVE
101: VFEGILRLVG RKDEKAAMCY SSSEHEILCR

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.