CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88832
KXG25648
KXG33526

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	EER88832	AT4G27280.1	21798944
AT2G24400.1	KXG25648	AT4G27280.1	21798944
AT2G24400.1	KXG33526	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G104500.1	Wheat	cytosol	83.87	83.2
TraesCS6B01G143500.1	Wheat	cytosol	83.87	81.25
TraesCS6A01G115700.1	Wheat	cytosol	83.06	80.47
Zm00001d053884_P001	Maize	cytosol	83.06	78.03
Os02t0143400-00	Rice	cytosol, mitochondrion	79.84	76.15
OQU76999	Sorghum	cytosol	70.16	60.0
KRH46980	Soybean	cytosol	51.61	45.07
KRH44681	Soybean	plastid	52.42	41.94
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	58.06	41.62
KRH52631	Soybean	plastid	56.45	40.94
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	57.26	40.11
KRH16185	Soybean	nucleus	57.26	40.11
KRH61972	Soybean	plastid	54.84	39.77
OQU82277	Sorghum	nucleus	54.84	39.77
VIT_04s0008g02800.t01	Wine grape	plastid	51.61	39.51
KRH04818	Soybean	cytosol	52.42	37.57
PGSC0003DMT400023703	Potato	nucleus	50.81	36.0
CDY20311	Canola	cytosol, mitochondrion, nucleus	50.0	35.43
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	50.81	35.39
CDY46148	Canola	cytosol, mitochondrion, nucleus	50.0	35.23
Bra032097.1-P	Field mustard	cytosol, mitochondrion, nucleus	49.19	34.46
Solyc03g124020.1.1	Tomato	nucleus	50.81	33.51
CDY13423	Canola	nucleus	47.58	33.15
CDY36449	Canola	cytosol, nucleus, plastid	48.39	32.97
Bra011258.1-P	Field mustard	nucleus	48.39	31.91
CDX68733	Canola	nucleus	48.39	31.91
CDY28255	Canola	nucleus	48.39	31.91
AT4G31320.1	Thale cress	cytosol	48.39	31.75
Bra024013.1-P	Field mustard	nucleus	48.39	31.58
CDX72302	Canola	nucleus	48.39	28.71
EER90331	Sorghum	mitochondrion	29.03	26.87
EER96781	Sorghum	cytosol	42.74	21.72
OQU81155	Sorghum	plastid	27.42	19.21
EES04503	Sorghum	plastid	27.42	17.71

Protein Annotations

EnsemblPlants:EES06266	EnsemblPlantsGene:SORBI_3004G038700	EntrezGene:8073369	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF113	PFAM:PF02519	ProteinID:EES06266	ProteinID:EES06266.1
RefSeq:XP_002453290.1	SEG:seg	UniParc:UPI0001A85981	UniProt:C5XUL0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:-:3188429..3189167

Molecular Weight (calculated)

14008.2 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.281

Length

124 amino acids

Sequence
(BLAST)

001: MGEQGRSSSN KIRDIVRLQQ LLKKWKRLAL SPKAGKSSSN HGVPKGFFAV CVGMEMKRFV IPTEYLGHWA FEELLKEAEE EFGFQHEGAL RIPCDVKVFE
101: GILRLVGRKE AVCYSPSQPG ILCR

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.