CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88832
KXG25648
KXG33526

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	EER88832	AT4G27280.1	21798944
AT2G24400.1	KXG25648	AT4G27280.1	21798944
AT2G24400.1	KXG33526	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036463_P001	Maize	cytosol, nucleus, plastid	86.9	85.71
TraesCS7D01G411100.1	Wheat	cytosol, mitochondrion, nucleus	72.41	77.21
TraesCS7A01G418100.1	Wheat	mitochondrion	71.03	76.87
TraesCS7B01G318200.1	Wheat	cytosol, mitochondrion, nucleus	72.41	76.64
EES06266	Sorghum	cytosol, nucleus, plastid	60.0	70.16
HORVU7Hr1G096880.1	Barley	mitochondrion	70.34	53.4
Os06t0701900-00	Rice	mitochondrion	71.72	53.06
KRH46980	Soybean	cytosol	42.07	42.96
OQU82277	Sorghum	nucleus	49.66	42.11
VIT_04s0008g02800.t01	Wine grape	plastid	46.21	41.36
KRH44681	Soybean	plastid	42.07	39.35
KRH52631	Soybean	plastid	45.52	38.6
KRH16185	Soybean	nucleus	46.9	38.42
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	45.52	38.15
KRH61972	Soybean	plastid	44.83	38.01
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	46.21	37.85
KRH04818	Soybean	cytosol	44.14	36.99
PGSC0003DMT400023703	Potato	nucleus	43.45	36.0
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	43.45	35.39
CDY20311	Canola	cytosol, mitochondrion, nucleus	41.38	34.29
CDY46148	Canola	cytosol, mitochondrion, nucleus	41.38	34.09
Solyc03g124020.1.1	Tomato	nucleus	43.45	33.51
Bra032097.1-P	Field mustard	cytosol, mitochondrion, nucleus	40.69	33.33
AT4G31320.1	Thale cress	cytosol	42.07	32.28
CDY13423	Canola	nucleus	39.31	32.02
CDY36449	Canola	cytosol, nucleus, plastid	40.0	31.87
Bra024013.1-P	Field mustard	nucleus	41.38	31.58
CDY28255	Canola	nucleus	40.0	30.85
CDX68733	Canola	nucleus	40.0	30.85
Bra011258.1-P	Field mustard	nucleus	40.0	30.85
EER90331	Sorghum	mitochondrion	26.9	29.1
CDX72302	Canola	nucleus	40.69	28.23
OQU81155	Sorghum	plastid	28.97	23.73
EER96781	Sorghum	cytosol	38.62	22.95
EES04503	Sorghum	plastid	28.97	21.88

Protein Annotations

EnsemblPlants:OQU76999	EnsemblPlantsGene:SORBI_3010G252401	EntrezGene:8065575	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF113	PFAM:PF02519	ProteinID:OQU76999	ProteinID:OQU76999.1
RefSeq:XP_002437539.1	SEG:seg	UniParc:UPI0001A89147	UniProt:A0A1W0VUN9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:+:59139791..59140228

Molecular Weight (calculated)

16186.4 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.528

Length

145 amino acids

Sequence
(BLAST)

001: MEEYQQVQQQ HQGGGRGSNK IRDIVRLQQL LKKWKKLATV TPSAASGGKG GGRSSVPRGS FAVYVGEEMR RFVIPTEYLG HWAFAELLRE AEEEFGFRHE
101: GALRIPCDVE SFEAILRLVQ QGGGRKKEPT AAMCDCSSET EILCR

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.