Factsheet for TraesCS4A01G050000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177600.1
TraesCS1B01G202600.1
TraesCS1D01G176100.1
TraesCS2A01G430400.1
TraesCS2B01G451000.1
TraesCS2D01G428000.1
TraesCS6A01G115700.1
TraesCS6B01G143500.1
TraesCS6D01G104500.1
TraesCS7A01G418100.1
TraesCS7B01G318200.1
TraesCS7D01G411100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	TraesCS2A01G430400.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS2B01G451000.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS2D01G428000.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6A01G115700.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6B01G143500.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6D01G104500.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7A01G418100.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7B01G318200.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7D01G411100.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT4G33920.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT4G33920.1	TraesCS1D01G176100.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G254500.1	Wheat	mitochondrion, nucleus, plastid, vacuole	88.32	97.17
TraesCS4B01G254700.1	Wheat	plastid	94.16	94.6
HORVU4Hr1G069380.3	Barley	peroxisome	42.76	76.57
Os03t0207400-01	Rice	mitochondrion	69.39	75.77
EER95306	Sorghum	mitochondrion	67.76	73.98
Zm00001d048131_P001	Maize	cytosol	66.36	72.63
VIT_03s0091g00470.t01	Wine grape	mitochondrion	52.57	59.06
KRG91074	Soybean	cytosol, mitochondrion	51.4	58.98
Solyc01g107300.2.1	Tomato	cytosol	31.54	58.95
KRH35699	Soybean	mitochondrion	51.64	58.47
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	50.0	57.68
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	50.47	56.84
TraesCS5A01G072500.1	Wheat	mitochondrion	50.7	56.66
KRH28403	Soybean	cytosol	49.53	56.53
VIT_07s0129g00520.t01	Wine grape	cytosol	50.7	56.51
Bra036972.1-P	Field mustard	mitochondrion	49.3	56.42
KRH77072	Soybean	cytosol	49.53	56.23
PGSC0003DMT400066175	Potato	cytosol	49.07	56.0
CDY49385	Canola	mitochondrion	48.83	55.88
CDX72438	Canola	mitochondrion	48.83	55.88
Solyc02g092750.2.1	Tomato	cytosol	47.66	55.74
CDY28332	Canola	mitochondrion	50.0	55.73
Bra034592.1-P	Field mustard	mitochondrion	50.0	55.58
CDY51944	Canola	mitochondrion	50.0	55.58
PGSC0003DMT400064207	Potato	cytosol	48.13	55.38
VIT_18s0001g09390.t01	Wine grape	mitochondrion	48.36	54.76
AT4G33920.1	Thale cress	mitochondrion	48.36	54.47
TraesCS5A01G398900.1	Wheat	mitochondrion	46.73	52.63
Solyc01g107310.2.1	Tomato	mitochondrion	20.56	47.57
TraesCS1A01G205300.2	Wheat	cytosol, peroxisome, plastid	41.12	44.9
TraesCS2A01G456300.2	Wheat	cytosol, mitochondrion, peroxisome, plastid	40.89	44.87
TraesCS3A01G538500.1	Wheat	mitochondrion	38.78	43.01
TraesCS4A01G363400.1	Wheat	mitochondrion	37.85	42.52
TraesCS7A01G537000.1	Wheat	mitochondrion	38.78	42.35
TraesCS5A01G505300.1	Wheat	mitochondrion	38.55	41.35
TraesCS5A01G478600.1	Wheat	cytosol	31.78	38.64
TraesCS7A01G386400.1	Wheat	cytosol	11.92	36.43
TraesCS2A01G290500.1	Wheat	nucleus	22.43	18.5
TraesCS6A01G263600.1	Wheat	plastid	22.43	16.08
TraesCS1A01G033700.1	Wheat	mitochondrion	21.26	15.22
TraesCS5A01G479600.1	Wheat	plastid	22.43	15.02
TraesCS5A01G547900.1	Wheat	cytosol, nucleus, peroxisome	19.86	13.98

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	InterPro:IPR001932	InterPro:IPR036457
PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF361	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
EnsemblPlantsGene:TraesCS4A01G050000	EnsemblPlants:TraesCS4A01G050000.1	TIGR:cd00143	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:40860014..40861390

Molecular Weight (calculated)

45627.5 Da

IEP (calculated)

8.825

GRAVY (calculated)

-0.201

Length

428 amino acids

Sequence
(BLAST)

001: MSTPGHPPGR LSHSRSTGHS LGLLLRSSFT PPHPTVDRGA CRGMRGSRWC CCCFGRGGGG GAGRSGSVGD DGLVWDVGLK AHASGEYSVA VAQANEALED
101: QAQVLVSPAA TLVGVYDGHG GPDAARFVNA RLFSLIQEFA SQSGGISAQV IKRAFGATEE EFMGMVERSW PSQPRLLSVG SCCLVGAIEG GTLHVANLGD
201: SRAVLGRLAS AGGKKRRAVV AERLSRDHNV ADEEVRREVA EAHPDDPHIV MSSHGVWRIK GIIQVSRSIG DAYLKRPDLC TPAVMQSLCP FPLRRPVMSA
301: VPSVTSRRLR PGDQFIIFAS DGLWEQLSDE AAVGIVSRSP RKGVAMRLVR AAQLEAARKK DIKYESIAAI EKGRRRRFHD DITVVVLFLD TPQPTAGAGG
401: IDGTRAPVDV FSLGPDDHGD DPTRPVLR

Best Arabidopsis Sequence Match ( AT3G51370.1 )
(BLAST)

001: MLSTLMKLLS ACLWPSSSSG KSSDSTGKQD GLLWYKDFGQ HLVGEFSMAV VQANNLLEDQ SQVESGPLST LDSGPYGTFI GIYDGHGGPE TSRFVNDHLF
101: QHLKRFAAEQ ASMSVDVIKK AYEATEEGFL GVVTKQWPTK PQIAAVGSCC LVGVICGGML YIANVGDSRA VLGRAMKATG EVIALQLSAE HNVSIESVRQ
201: EMHSLHPDDS HIVMLKHNVW RVKGLIQISR SIGDVYLKKA EFNKEPLYTK YRIREPFKRP ILSGEPTITE HEIQPQDKFL IFASDGLWEQ MSNQEAVDIV
301: QNHPRNGIAR RLVKMALQEA AKKREMRYSD LKKIERGVRR HFHDDITVVI IFLDTNQVSS VKGPPLSIRG GGMTFPKKI

Arabidopsis Description

Probable protein phosphatase 2C 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD12]
SUBAcon: [extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.