CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX90305
CDY12116
CDY20311
CDY22394
CDY46148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	CDY20311	AT2G24400.1	21798944
AT4G33920.1	CDY46148	AT2G24400.1	21798944
AT4G33920.1	CDX72718	AT4G39050.1	21798944
AT4G33920.1	CDX90305	AT4G39050.1	21798944
AT4G33920.1	CDY12116	AT4G39050.1	21798944
AT4G33920.1	CDY22394	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49385	Canola	mitochondrion	97.06	97.06
AT4G33920.1	Thale cress	mitochondrion	88.5	87.11
CDY28332	Canola	mitochondrion	89.3	86.98
CDY51944	Canola	mitochondrion	89.3	86.75
KRH35699	Soybean	mitochondrion	71.12	70.37
VIT_03s0091g00470.t01	Wine grape	mitochondrion	71.66	70.34
KRG91074	Soybean	cytosol, mitochondrion	69.79	69.97
Solyc01g107300.2.1	Tomato	cytosol	41.98	68.56
PGSC0003DMT400066175	Potato	cytosol	68.18	68.0
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	66.58	67.12
GSMUA_Achr6P11170_001	Banana	cytosol	67.38	67.02
VIT_07s0129g00520.t01	Wine grape	cytosol	67.65	65.89
VIT_18s0001g09390.t01	Wine grape	mitochondrion	66.31	65.61
KRH28403	Soybean	cytosol	64.97	64.8
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	65.51	64.47
KRH77072	Soybean	cytosol	64.71	64.19
GSMUA_Achr3P02220_001	Banana	mitochondrion	64.17	63.83
GSMUA_Achr2P21550_001	Banana	mitochondrion	65.78	63.73
Os12t0580900-01	Rice	mitochondrion	65.78	62.76
TraesCS5B01G078500.1	Wheat	mitochondrion	63.1	61.62
HORVU5Hr1G018930.2	Barley	mitochondrion	62.83	61.36
TraesCS5D01G085200.1	Wheat	mitochondrion	62.83	61.36
GSMUA_Achr4P14220_001	Banana	mitochondrion	60.7	60.86
TraesCS5A01G072500.1	Wheat	mitochondrion	62.03	60.57
Solyc01g107310.2.1	Tomato	mitochondrion	29.14	58.92
Os03t0207400-01	Rice	mitochondrion	56.95	54.34
Zm00001d048131_P001	Maize	cytosol	56.68	54.22
EER95306	Sorghum	mitochondrion	55.88	53.32
TraesCS4D01G254500.1	Wheat	mitochondrion, nucleus, plastid, vacuole	55.35	53.21
CDY16313	Canola	extracellular	51.07	50.66
CDX73725	Canola	vacuole	50.8	50.4
CDY33283	Canola	plastid	50.8	49.74
CDX90277	Canola	cytosol, mitochondrion, nucleus	50.53	49.74
CDY12086	Canola	cytosol, mitochondrion, nucleus	50.27	49.47
CDX76124	Canola	mitochondrion	49.47	49.47
CDY08420	Canola	cytosol, mitochondrion, plastid	50.0	49.34
CDY54807	Canola	nucleus, peroxisome, plastid	51.34	49.23
CDY42159	Canola	cytosol	49.73	49.08
CDY14069	Canola	cytosol, mitochondrion	51.07	48.85
TraesCS4A01G050000.1	Wheat	plastid	55.88	48.83
CDX75902	Canola	plastid	49.2	48.81
CDY02904	Canola	mitochondrion	48.66	48.66
CDY05001	Canola	cytosol, mitochondrion	50.8	48.59
CDY52665	Canola	cytosol	49.2	48.55
CDY39026	Canola	cytosol, plastid, vacuole	48.93	48.41
CDY34992	Canola	cytosol, plastid, vacuole	48.93	48.41
TraesCS4B01G254700.1	Wheat	plastid	55.08	48.36
CDY11224	Canola	cytosol	45.72	47.9
CDY55405	Canola	cytosol, nucleus, plastid	47.06	47.7
CDY10428	Canola	mitochondrion	46.26	47.66
CDX70348	Canola	cytosol, mitochondrion	46.26	47.66
CDY51441	Canola	mitochondrion	49.2	47.55
CDX73413	Canola	mitochondrion	49.2	47.55
CDY04862	Canola	cytosol, mitochondrion, plastid	45.72	47.5
CDY50535	Canola	cytosol, mitochondrion, plastid	48.93	47.29
CDX70071	Canola	cytosol, mitochondrion	48.4	47.26
CDX98953	Canola	cytosol, mitochondrion	48.4	47.26
CDY70696	Canola	extracellular, peroxisome	40.64	46.91
CDX80837	Canola	cytosol, mitochondrion	45.45	46.7
HORVU4Hr1G069380.3	Barley	peroxisome	29.68	46.44
CDY40818	Canola	mitochondrion	13.9	41.27
CDY29015	Canola	cytosol	39.04	40.56
CDX78002	Canola	vacuole	50.8	38.08
CDY51276	Canola	mitochondrion	8.29	37.35
CDY40354	Canola	cytosol	19.52	30.29
CDY71703	Canola	cytosol	12.57	23.5
CDY43107	Canola	cytosol, nucleus, peroxisome	25.94	19.8
CDX92079	Canola	cytosol, nucleus, peroxisome	25.94	19.56
CDY57256	Canola	cytosol, nucleus, peroxisome	27.54	17.64
CDY15623	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.27	17.56
CDX95140	Canola	cytosol, mitochondrion, nucleus	28.34	17.1
CDY44706	Canola	nucleus	26.74	16.89
CDY41610	Canola	nucleus	26.74	16.84
CDY71973	Canola	cytosol, nucleus, peroxisome	23.8	16.76
CDY71801	Canola	cytosol	24.33	16.7
CDY06718	Canola	mitochondrion, plastid	28.07	16.64
CDY68192	Canola	mitochondrion, nucleus, plastid	24.33	16.11
CDY62569	Canola	nucleus	26.2	15.96
CDY59038	Canola	plastid	24.33	15.88
CDX73980	Canola	nucleus	27.54	15.47
CDY07928	Canola	nucleus	27.27	15.41
CDY31682	Canola	nucleus, plastid	25.13	14.14
CDX84217	Canola	nucleus, plastid	24.6	13.88
CDX80059	Canola	cytosol, nucleus, peroxisome	29.14	12.82
CDY41568	Canola	cytosol, nucleus, peroxisome	29.14	12.81

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:A0A078CBR5	EnsemblPlants:CDX72438
ProteinID:CDX72438	ProteinID:CDX72438.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0043169	EnsemblPlantsGene:GSBRNA2T00099941001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF362	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0004EC6E99	SEG:seg

Description

BnaC07g44600D

Coordinates

chrLK031796:+:1240332..1242326

Molecular Weight (calculated)

41928.6 Da

IEP (calculated)

9.633

GRAVY (calculated)

-0.289

Length

374 amino acids

Sequence
(BLAST)

001: MLRALVRPLE RWCPGTRANG DALLWQSELR PHAGGEYSIA VVQANSRLED QSQVFTSSSA TYVGVYDGHG GPEASRFVNR HLFPYIHKFA KEEGGISPDV
101: IKRAFKETEE DFCHMVQRSL PLKPQMATVG TCCLFGAISN GTLYVANLGD SRAVLGRVVS GVAVAERLST DHNVAVEEVR KEVKALNPDD SQIVMYIRGV
201: WRIKGIIQVS RSIGDVYLKK PEFYRDPVFQ QHGNPIPLRR PAMTAEPSII VRKLKPQDLF LIFASDGLWE HLSDEAAVEI VLKHPRAGIA RRLVRAALEE
301: AAKKREMRYG DMKTIARGVR RHFHDDVSVV VVYLDQHKPK NGKLIQQGGI TAPPDIYSLR SDEAKQRQLL NVLY

Best Arabidopsis Sequence Match ( AT4G33920.1 )
(BLAST)

001: MLRALARPLE RCLGSRASGD GLLWQSELRP HAGGDYSIAV VQANSRLEDQ SQVFTSSSAT YVGVYDGHGG PEASRFVNRH LFPYMHKFAR EHGGLSVDVI
101: KKAFKETEEE FCGMVKRSLP MKPQMATVGS CCLVGAISND TLYVANLGDS RAVLGSVVSG VDSNKGAVAE RLSTDHNVAV EEVRKEVKAL NPDDSQIVLY
201: TRGVWRIKGI IQVSRSIGDV YLKKPEYYRD PIFQRHGNPI PLRRPAMTAE PSIIVRKLKP QDLFLIFASD GLWEHLSDET AVEIVLKHPR TGIARRLVRA
301: ALEEAAKKRE MRYGDIKKIA KGIRRHFHDD ISVIVVYLDQ NKTSSSNSKL VKQGGITAPP DIYSLHSDEA EQRRLLNVLY

Arabidopsis Description

Probable protein phosphatase 2C 63 [Source:UniProtKB/Swiss-Prot;Acc:O81760]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.