Factsheet for TraesCS5D01G085200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G177600.1
TraesCS1B01G202600.1
TraesCS1D01G176100.1
TraesCS2A01G430400.1
TraesCS2B01G451000.1
TraesCS2D01G428000.1
TraesCS6A01G115700.1
TraesCS6B01G143500.1
TraesCS6D01G104500.1
TraesCS7A01G418100.1
TraesCS7B01G318200.1
TraesCS7D01G411100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	TraesCS2A01G430400.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS2B01G451000.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS2D01G428000.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6A01G115700.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6B01G143500.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS6D01G104500.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7A01G418100.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7B01G318200.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS7D01G411100.1	AT2G24400.1	21798944
AT4G33920.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT4G33920.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT4G33920.1	TraesCS1D01G176100.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G078500.1	Wheat	mitochondrion	97.13	97.13
TraesCS5A01G072500.1	Wheat	mitochondrion	95.3	95.3
HORVU5Hr1G018930.2	Barley	mitochondrion	93.73	93.73
Os12t0580900-01	Rice	mitochondrion	79.9	78.06
GSMUA_Achr6P11170_001	Banana	cytosol	67.89	69.15
KRG91074	Soybean	cytosol, mitochondrion	66.32	68.1
KRH35699	Soybean	mitochondrion	66.06	66.93
VIT_03s0091g00470.t01	Wine grape	mitochondrion	66.58	66.93
GSMUA_Achr3P02220_001	Banana	mitochondrion	64.75	65.96
PGSC0003DMT400066175	Potato	cytosol	64.49	65.87
Solyc01g107300.2.1	Tomato	cytosol	38.9	65.07
GSMUA_Achr2P21550_001	Banana	mitochondrion	65.54	65.03
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	62.92	64.96
VIT_07s0129g00520.t01	Wine grape	cytosol	63.71	63.54
Bra036972.1-P	Field mustard	mitochondrion	61.62	63.1
VIT_18s0001g09390.t01	Wine grape	mitochondrion	62.14	62.96
Solyc02g092750.2.1	Tomato	cytosol	60.05	62.84
CDX72438	Canola	mitochondrion	61.36	62.83
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	62.14	62.63
CDY49385	Canola	mitochondrion	61.1	62.57
AT4G33920.1	Thale cress	mitochondrion	61.88	62.37
PGSC0003DMT400064207	Potato	cytosol	59.53	61.29
Bra034592.1-P	Field mustard	mitochondrion	61.36	61.04
CDY28332	Canola	mitochondrion	61.1	60.94
CDY51944	Canola	mitochondrion	61.1	60.78
KRH28403	Soybean	cytosol	59.27	60.53
KRH77072	Soybean	cytosol	59.53	60.48
TraesCS5D01G408500.1	Wheat	mitochondrion	56.92	58.6
Solyc01g107310.2.1	Tomato	mitochondrion	27.68	57.3
TraesCS4D01G254500.1	Wheat	mitochondrion, nucleus, plastid, vacuole	55.61	54.76
TraesCS2D01G456600.2	Wheat	mitochondrion	51.96	51.03
TraesCS1D01G208600.1	Wheat	cytosol, peroxisome, plastid	47.52	46.43
TraesCS3D01G544100.1	Wheat	mitochondrion	46.74	46.37
TraesCS7D01G524700.1	Wheat	mitochondrion	47.0	45.92
TraesCS4D01G331100.1	Wheat	mitochondrion	47.52	45.61
TraesCS5D01G510100.1	Wheat	plastid	44.65	44.42
TraesCS2D01G288400.1	Wheat	nucleus	23.76	16.7
TraesCS6D01G251300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	24.28	15.58
TraesCS4D01G357800.1	Wheat	cytosol, nucleus, peroxisome	23.5	14.88
TraesCS5D01G493200.1	Wheat	mitochondrion, plastid	24.54	14.73

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	InterPro:IPR001932	InterPro:IPR036457
PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF362	SMART:SM00331	SMART:SM00332	SUPFAM:SSF81606
EnsemblPlantsGene:TraesCS5D01G085200	EnsemblPlants:TraesCS5D01G085200.1	TIGR:cd00143	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:89999149..90001778

Molecular Weight (calculated)

42031.3 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.237

Length

383 amino acids

Sequence
(BLAST)

001: MLRWLARPAE RCLGRGGCGC GSGAGGGGDG LLWHAELKPH ASGEYSFAVA QANERLEDQG QVVTSPASTV VGVYDGHGGP EASRFLSSRL FPNLHKFASE
101: QGGMSIDAIK KAFHATEEEF LHLVKGTWLK QPKIASVGSC CLVGAIANNK LYVANLGDSR AVLGHRGPNG RGVVAERLSN DHNVADEAVR KEVIQQHPDD
201: SQIVVYSRGV WRIKGIIQIS RSFGDAYLKK PEFARDPIFQ QYVCPVPLKR AVITAVPSIK VRQIGQQDLF VIFASDGLWE QLTDKAAVEI VFKNPRAGIA
301: RRLVRAAISE AARKREMRYA DMQHIERGIK RHFHDDITVV VLYLDSHKHD AQAKFGNLDS FRFTNAPVDI FSPSGQTVEP TVM

Best Arabidopsis Sequence Match ( AT3G12620.1 )
(BLAST)

001: MVSSATILRM VAPCWRRPSV KGDHSTRDAN GRCDGLLWYK DSGNHVAGEF SMSVIQANNL LEDHSKLESG PVSMFDSGPQ ATFVGVYDGH GGPEAARFVN
101: KHLFDNIRKF TSENHGMSAN VITKAFLATE EDFLSLVRRQ WQIKPQIASV GACCLVGIIC SGLLYIANAG DSRVVLGRLE KAFKIVKAVQ LSSEHNASLE
201: SVREELRSLH PNDPQIVVLK HKVWRVKGII QVSRSIGDAY LKKAEFNREP LLAKFRVPEV FHKPILRAEP AITVHKIHPE DQFLIFASDG LWEHLSNQEA
301: VDIVNTCPRN GIARKLIKTA LREAAKKREM RYSDLKKIDR GVRRHFHDDI TVIVVFLDSH LVSRSTSRRP LLSISGGGDL AGPST

Arabidopsis Description

PP2C38Probable protein phosphatase 2C 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHJ9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.