Factsheet for GSMUA_Achr4P14220_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P10530_001
GSMUA_Achr5P24150_001
GSMUA_Achr6P03720_001
GSMUA_Achr9P19570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33920.1	GSMUA_Achr1P10530_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr5P24150_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr6P03720_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr9P19570_001	AT2G24400.1	21798944
AT4G33920.1	GSMUA_Achr11P...	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11170_001	Banana	cytosol	73.19	72.61
KRG91074	Soybean	cytosol, mitochondrion	71.05	71.05
GSMUA_Achr3P02220_001	Banana	mitochondrion	70.78	70.21
KRH35699	Soybean	mitochondrion	71.05	70.11
VIT_03s0091g00470.t01	Wine grape	mitochondrion	71.05	69.55
VIT_07s0129g00520.t01	Wine grape	cytosol	71.31	69.27
GSMUA_Achr2P21550_001	Banana	mitochondrion	70.51	68.13
VIT_18s0001g09390.t01	Wine grape	mitochondrion	68.63	67.72
Solyc01g107300.2.1	Tomato	cytosol	41.02	66.81
PGSC0003DMT400066175	Potato	cytosol	67.02	66.67
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	66.22	66.58
Solyc02g092750.2.1	Tomato	cytosol	63.81	65.03
KRH28403	Soybean	cytosol	64.61	64.27
PGSC0003DMT400064207	Potato	cytosol	64.08	64.25
KRH77072	Soybean	cytosol	64.34	63.66
Solyc10g049630.1.1	Tomato	mitochondrion, nucleus	64.08	62.89
AT4G33920.1	Thale cress	mitochondrion	63.0	61.84
Bra036972.1-P	Field mustard	mitochondrion	61.39	61.23
CDY49385	Canola	mitochondrion	61.13	60.96
CDX72438	Canola	mitochondrion	60.86	60.7
Bra034592.1-P	Field mustard	mitochondrion	61.93	60.0
CDY28332	Canola	mitochondrion	61.66	59.9
CDY51944	Canola	mitochondrion	61.66	59.74
Solyc01g107310.2.1	Tomato	mitochondrion	28.95	58.38
GSMUA_Achr4P04870_001	Banana	cytosol	47.99	52.34
GSMUA_Achr6P23480_001	Banana	cytosol	46.38	51.8
GSMUA_Achr6P15470_001	Banana	mitochondrion	52.28	51.45
GSMUA_Achr10P...	Banana	cytosol	51.47	51.06
GSMUA_Achr8P13470_001	Banana	mitochondrion	52.01	50.79
GSMUA_Achr11P...	Banana	mitochondrion	51.21	50.53
GSMUA_Achr3P00610_001	Banana	cytosol	46.92	50.29
GSMUA_Achr5P11520_001	Banana	mitochondrion	51.74	48.74
GSMUA_Achr2P02070_001	Banana	mitochondrion	47.99	48.12
GSMUA_Achr3P26820_001	Banana	mitochondrion	50.13	47.46
GSMUA_Achr8P13120_001	Banana	cytosol	49.87	47.45
GSMUA_Achr1P26350_001	Banana	mitochondrion, peroxisome, plastid	49.06	46.1
GSMUA_Achr7P03910_001	Banana	cytosol, nucleus, peroxisome	46.92	45.69
GSMUA_Achr9P24110_001	Banana	cytosol	47.19	44.0
GSMUA_Achr10P...	Banana	cytosol	25.47	26.76
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	26.01	20.34
GSMUA_Achr5P29080_001	Banana	mitochondrion	27.08	17.5
GSMUA_Achr2P16350_001	Banana	mitochondrion	26.01	17.41
GSMUA_Achr9P03940_001	Banana	cytosol, nucleus, peroxisome	26.01	16.9
GSMUA_Achr5P13850_001	Banana	nucleus	27.35	16.78
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	27.35	16.22
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus, peroxisome	24.66	15.78
GSMUA_Achr10P...	Banana	mitochondrion, nucleus, plastid	25.74	15.76
GSMUA_Achr8P18740_001	Banana	cytosol, nucleus, peroxisome	27.35	13.71

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G14220_001	EnsemblPlants:GSMUA_Achr4P14220_001	EnsemblPlants:GSMUA_Achr4T14220_001	InterPro:IPR001932	InterPro:IPR036457
UniProt:M0SNT7	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF362	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0002954F62	SEG:seg	:	:	:	:

Description

Probable protein phosphatase 2C 78 [Source:GMGC_GENE;Acc:GSMUA_Achr4G14220_001]

Coordinates

chr4:+:10641814..10644847

Molecular Weight (calculated)

41193.1 Da

IEP (calculated)

8.232

GRAVY (calculated)

-0.224

Length

373 amino acids

Sequence
(BLAST)

001: MRRRLCWHPV HRCFGWCGAR GGAGADGLLW HTDLKPHASG DFSIAVVQAN NSLEDQGQVL ASPSTTYFGV FDGHGGPEAS RFVNNRIFSH LHEIASEQGG
101: LSVEVIRKAF NATEEEFLQL VKRSWLSRPN IASVGSCCLV GAITDNVLYV ANLGDSRAVL GKQGSDGRSV VAERLSRDHN VAEEDVRKEL AELHPDDSRI
201: VLCNRGVWRI KGIIQVSRSI GDVYLKKPSF SRDPLFQQCA APIPLKRPVM TSEPSIRTRK LTQQDLFLIF ASDGLWEQLS DAAAVDIVFK SPRAGIAKRL
301: VRAALTEAAK KSEIKYDDIK HMEKGVRRHY HDDITVIVIY LDHFEGKASK LQGSTFDCTS APVDIFSLNA ATT

Best Arabidopsis Sequence Match ( AT4G33920.1 )
(BLAST)

001: MLRALARPLE RCLGSRASGD GLLWQSELRP HAGGDYSIAV VQANSRLEDQ SQVFTSSSAT YVGVYDGHGG PEASRFVNRH LFPYMHKFAR EHGGLSVDVI
101: KKAFKETEEE FCGMVKRSLP MKPQMATVGS CCLVGAISND TLYVANLGDS RAVLGSVVSG VDSNKGAVAE RLSTDHNVAV EEVRKEVKAL NPDDSQIVLY
201: TRGVWRIKGI IQVSRSIGDV YLKKPEYYRD PIFQRHGNPI PLRRPAMTAE PSIIVRKLKP QDLFLIFASD GLWEHLSDET AVEIVLKHPR TGIARRLVRA
301: ALEEAAKKRE MRYGDIKKIA KGIRRHFHDD ISVIVVYLDQ NKTSSSNSKL VKQGGITAPP DIYSLHSDEA EQRRLLNVLY

Arabidopsis Description

Probable protein phosphatase 2C 63 [Source:UniProtKB/Swiss-Prot;Acc:O81760]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.