CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038738.1-P	Field mustard	cytosol, mitochondrion, plastid	100.0	100.0
CDY52665	Canola	cytosol	96.64	98.68
CDY42159	Canola	cytosol	91.47	93.4
AT3G12620.2	Thale cress	mitochondrion	92.76	93.25
CDY08420	Canola	cytosol, mitochondrion, plastid	90.7	92.61
VIT_13s0067g03500.t01	Wine grape	cytosol, mitochondrion, plastid	75.71	77.31
PGSC0003DMT400060005	Potato	cytosol	74.16	74.74
Solyc05g055980.2.1	Tomato	cytosol	59.69	73.57
CDX76124	Canola	mitochondrion	70.54	72.99
CDY02904	Canola	mitochondrion	70.03	72.46
CDX73413	Canola	mitochondrion	72.35	72.35
KRG93033	Soybean	mitochondrion	72.35	72.16
CDY51441	Canola	mitochondrion	72.09	72.09
KRH36281	Soybean	mitochondrion	71.06	70.69
GSMUA_Achr10P...	Banana	cytosol	65.37	67.29
GSMUA_Achr6P23480_001	Banana	cytosol	57.62	66.77
Os01t0976700-01	Rice	mitochondrion	64.6	66.49
TraesCS3A01G538500.1	Wheat	mitochondrion	66.15	66.32
GSMUA_Achr6P15470_001	Banana	mitochondrion	64.6	65.96
TraesCS3D01G544100.1	Wheat	mitochondrion	65.37	65.54
TraesCS3B01G604000.1	Wheat	mitochondrion	65.37	65.54
HORVU3Hr1G114160.1	Barley	mitochondrion	52.45	65.27
HORVU3Hr1G117670.6	Barley	mitochondrion	65.37	64.05
CDY16313	Canola	extracellular	62.02	63.66
CDX90277	Canola	cytosol, mitochondrion, nucleus	62.27	63.42
CDY12086	Canola	cytosol, mitochondrion, nucleus	62.02	63.16
CDY33283	Canola	plastid	62.02	62.83
CDX73725	Canola	vacuole	60.21	61.8
CDY54807	Canola	nucleus, peroxisome, plastid	61.24	60.77
CDY70696	Canola	extracellular, peroxisome	50.39	60.19
CDX70348	Canola	cytosol, mitochondrion	56.07	59.78
CDY11224	Canola	cytosol	55.04	59.66
TraesCS7A01G386400.1	Wheat	cytosol	21.45	59.29
CDY10428	Canola	mitochondrion	55.56	59.23
CDY04862	Canola	cytosol, mitochondrion, plastid	54.78	58.89
CDY55405	Canola	cytosol, nucleus, plastid	55.04	57.72
CDX80837	Canola	cytosol, mitochondrion	54.01	57.42
CDX75902	Canola	plastid	54.01	55.44
CDY34992	Canola	cytosol, plastid, vacuole	52.97	54.23
CDY39026	Canola	cytosol, plastid, vacuole	52.97	54.23
CDY29015	Canola	cytosol	48.32	51.94
CDY14069	Canola	cytosol, mitochondrion	51.16	50.64
HORVU2Hr1G009490.1	Barley	mitochondrion	20.67	50.63
CDY05001	Canola	cytosol, mitochondrion	50.65	50.13
CDX98953	Canola	cytosol, mitochondrion	48.84	49.35
CDX70071	Canola	cytosol, mitochondrion	48.58	49.09
CDX72438	Canola	mitochondrion	47.29	48.93
CDY49385	Canola	mitochondrion	47.03	48.66
CDY28332	Canola	mitochondrion	48.06	48.44
CDY51944	Canola	mitochondrion	48.06	48.31
CDY40818	Canola	mitochondrion	15.5	47.62
CDX78002	Canola	vacuole	59.69	46.29
CDY51276	Canola	mitochondrion	8.53	39.76
CDY40354	Canola	cytosol	20.67	33.2
CDY71703	Canola	cytosol	13.18	25.5
CDY43107	Canola	cytosol, nucleus, peroxisome	26.61	21.02
CDX92079	Canola	cytosol, nucleus, peroxisome	26.61	20.77
CDY71973	Canola	cytosol, nucleus, peroxisome	26.87	19.59
CDY57256	Canola	cytosol, nucleus, peroxisome	28.68	19.01
CDY71801	Canola	cytosol	26.61	18.9
CDY15623	Canola	cytosol, mitochondrion, nucleus, peroxisome	27.91	18.59
CDX95140	Canola	cytosol, mitochondrion, nucleus	29.2	18.23
CDY62569	Canola	nucleus	28.68	18.08
CDY06718	Canola	mitochondrion, plastid	29.2	17.91
CDY44706	Canola	nucleus	26.61	17.4
CDY41610	Canola	nucleus	26.61	17.34
CDY07928	Canola	nucleus	29.2	17.07
CDY68192	Canola	mitochondrion, nucleus, plastid	24.81	16.99
CDX73980	Canola	nucleus	29.2	16.97
CDY59038	Canola	plastid	25.06	16.93
CDY31682	Canola	nucleus, plastid	26.87	15.64
CDX84217	Canola	nucleus, plastid	26.36	15.38
CDX80059	Canola	cytosol, nucleus, peroxisome	32.56	14.82
CDY41568	Canola	cytosol, nucleus, peroxisome	32.56	14.81

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:A0A078IHU1	UniProt:A0A078IHU1
EnsemblPlants:CDY50535	ProteinID:CDY50535	ProteinID:CDY50535.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0004722	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
GO:GO:0043169	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00096959001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF358	SMART:SM00332	SUPFAM:SSF81606	TMHMM:TMhelix	UniParc:UPI000254522E

Description

BnaA01g30450DBnaA01g30450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHU1]

Coordinates

chrLK032921:-:50274..52635

Molecular Weight (calculated)

43049.9 Da

IEP (calculated)

9.493

GRAVY (calculated)

-0.216

Length

387 amino acids

Sequence
(BLAST)

001: MVSETILRIV APCWRKPSVK GDHSTRGDVN GRCDGLLWYK DSGNHVAGEF SMSVIQANNL LEDHSKLESG PVSMFDSGPQ ATFVGVYDGH GGPEAARFVN
101: KHLFDNIRKF TSENHGMSAS VITKAFLATE EEFLSLVRRQ WQTKPQIASV GACCLVGIIC SGSLYIANAG DSRVVLGRLE KAYKIVKAVQ LSSEHNASYE
201: SVREELRLLH PDDPQIVVLK HKVWRVKGII QVSRSIGDAY LKKAEFNREP LLAKFRVPET FHTPILLAEP AITVHKIHSE DKFLIFASDG LWEHMTNQEA
301: VDIVNTGPRN GIARKLIKTA LREAAKKREM RYSDLKKIDR GVRRHFHDDI TVIVVFLDSH LVSRSILRRP LISISGGGEL AGPSSTP

Best Arabidopsis Sequence Match ( AT3G12620.1 )
(BLAST)

001: MVSSATILRM VAPCWRRPSV KGDHSTRDAN GRCDGLLWYK DSGNHVAGEF SMSVIQANNL LEDHSKLESG PVSMFDSGPQ ATFVGVYDGH GGPEAARFVN
101: KHLFDNIRKF TSENHGMSAN VITKAFLATE EDFLSLVRRQ WQIKPQIASV GACCLVGIIC SGLLYIANAG DSRVVLGRLE KAFKIVKAVQ LSSEHNASLE
201: SVREELRSLH PNDPQIVVLK HKVWRVKGII QVSRSIGDAY LKKAEFNREP LLAKFRVPEV FHKPILRAEP AITVHKIHPE DQFLIFASDG LWEHLSNQEA
301: VDIVNTCPRN GIARKLIKTA LREAAKKREM RYSDLKKIDR GVRRHFHDDI TVIVVFLDSH LVSRSTSRRP LLSISGGGDL AGPST

Arabidopsis Description

PP2C38Probable protein phosphatase 2C 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHJ9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.