CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06718	Canola	mitochondrion, plastid	93.23	91.6
CDY57256	Canola	cytosol, nucleus, peroxisome	79.52	84.42
CDY15623	Canola	cytosol, mitochondrion, nucleus, peroxisome	77.9	83.13
AT1G07630.1	Thale cress	cytosol, nucleus, peroxisome	86.29	80.82
CDY71801	Canola	cytosol	69.03	78.53
CDY71973	Canola	cytosol, nucleus, peroxisome	67.1	78.34
CDY40354	Canola	cytosol	27.26	70.12
VIT_06s0004g04600.t01	Wine grape	nucleus	73.39	62.85
KRH24796	Soybean	nucleus	71.61	61.67
KRH29800	Soybean	cytosol, nucleus, plastid	71.29	61.39
Solyc06g076100.2.1	Tomato	nucleus	69.84	61.16
PGSC0003DMT400078173	Potato	nucleus	69.84	60.81
CDY71703	Canola	cytosol	18.39	57.0
CDY44706	Canola	nucleus	50.0	52.36
CDY41610	Canola	nucleus	49.84	52.02
CDY62569	Canola	nucleus	51.13	51.63
CDY07928	Canola	nucleus	49.52	46.37
CDX73980	Canola	nucleus	49.68	46.25
CDY68192	Canola	mitochondrion, nucleus, plastid	39.68	43.54
CDY59038	Canola	plastid	38.55	41.71
CDY31682	Canola	nucleus, plastid	44.68	41.65
CDX84217	Canola	nucleus, plastid	44.03	41.18
CDY43107	Canola	cytosol, nucleus, peroxisome	27.9	35.31
CDY41568	Canola	cytosol, nucleus, peroxisome	48.23	35.14
CDX80059	Canola	cytosol, nucleus, peroxisome	47.9	34.94
CDX92079	Canola	cytosol, nucleus, peroxisome	27.9	34.88
CDX73725	Canola	vacuole	20.0	32.89
CDY16313	Canola	extracellular	19.52	32.1
CDY33283	Canola	plastid	19.52	31.68
CDY04862	Canola	cytosol, mitochondrion, plastid	18.23	31.39
CDY55405	Canola	cytosol, nucleus, plastid	18.55	31.17
CDX76124	Canola	mitochondrion	18.71	31.02
CDY02904	Canola	mitochondrion	18.55	30.75
CDY11224	Canola	cytosol	17.58	30.53
CDX90277	Canola	cytosol, mitochondrion, nucleus	18.71	30.53
CDX80837	Canola	cytosol, mitochondrion	17.9	30.49
CDY10428	Canola	mitochondrion	17.74	30.3
CDX70348	Canola	cytosol, mitochondrion	17.74	30.3
CDY12086	Canola	cytosol, mitochondrion, nucleus	18.55	30.26
CDX73413	Canola	mitochondrion	18.87	30.23
CDY51441	Canola	mitochondrion	18.87	30.23
CDY52665	Canola	cytosol	18.06	29.55
CDX75902	Canola	plastid	17.9	29.44
CDY50535	Canola	cytosol, mitochondrion, plastid	18.23	29.2
CDY05001	Canola	cytosol, mitochondrion	18.39	29.16
CDY14069	Canola	cytosol, mitochondrion	18.39	29.16
CDY39026	Canola	cytosol, plastid, vacuole	17.74	29.1
CDY34992	Canola	cytosol, plastid, vacuole	17.74	29.1
CDY42159	Canola	cytosol	17.74	29.02
CDY54807	Canola	nucleus, peroxisome, plastid	18.23	28.97
CDY08420	Canola	cytosol, mitochondrion, plastid	17.58	28.76
CDX70071	Canola	cytosol, mitochondrion	17.74	28.72
CDX98953	Canola	cytosol, mitochondrion	17.58	28.46
CDX72438	Canola	mitochondrion	17.1	28.34
CDY40818	Canola	mitochondrion	5.65	27.78
CDY49385	Canola	mitochondrion	16.61	27.54
CDY70696	Canola	extracellular, peroxisome	14.35	27.47
CDY28332	Canola	mitochondrion	16.94	27.34
CDY51944	Canola	mitochondrion	16.94	27.27
CDY29015	Canola	cytosol	14.84	25.56
CDY51276	Canola	mitochondrion	3.39	25.3
CDX78002	Canola	vacuole	20.0	24.85

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	Gene3D:3.60.40.10	GO:A0A078E0K3	EnsemblPlants:CDX95140
ProteinID:CDX95140	ProteinID:CDX95140.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00100687001	InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf
InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF228	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0004EDE265	SEG:seg	:	:	:	:

Description

BnaC05g05310D

Coordinates

chrLK031886:-:1356390..1358865

Molecular Weight (calculated)

69034.4 Da

IEP (calculated)

5.600

GRAVY (calculated)

-0.509

Length

620 amino acids

Sequence
(BLAST)

001: MGNGATKLST CFTGSGDRFR QKHISVPPPT DPLDEGLGHS FCYVRPEPTL ITCSKVHSEV EETTMFRTIS GASVSANAAT PLSTSLYDPY GHIDRAAAFE
101: STTSFPSIPL QPIPKSSGGG GGGGGPVVLG SGPIERGFLS GPIERGFLSG PLDRGGLFSG PLEKQPSSDH HHRLQRSFSH GLALRVGSRK RSLVRILRRA
201: ISRTVSRGQN SIVAPGTLDD DVSLESQNLQ WAQGKAGEDR VHVVVSEEHG WLFVGIYDGF NGPDATDYLL SHLYPTLHRE LKGLLWDDPK PQDLDRSCLD
301: ESCSDRVDND QCEGRWRCEW EREKKDLDRR LKEQINNRKS RSDSDQLTNH SDVLKALSLA LRKTEEAYLD TADKMLEENP ELALMGSCVL VMLMKGEDIY
401: VMNVGDSRVV LGQKQDLKRI NEETMKNDLR GCEGDHEVAN LSAFQLTVDH STDVEEEVER IKNEHPDDAS AVSNERVKGS LKVTRAFGAG FLKQPKWNNA
501: LLEMFQIDYI GESPYINCLP SLYHHRLGSK DKFLILSSDG LYQYFTNEEA VSEVELFITL QPEGDPAQHL VQELLFRAAK KAGMDFHELL EIPQGERRRY
601: HDDVSIVVIS LEGRMWKSCV

Best Arabidopsis Sequence Match ( AT1G07630.1 )
(BLAST)

001: MGNGVTKLSI CFTGGGGERL RPKDISVLLP DPLDEGLGHS FCYVRPDPTL ISSSKVHSEE DTTTTTFRTI SGASVSANTA TPLSTSLYDP YGHIDRAAAF
101: ESTTSFSSIP LQPIPKSSGP IVLGSGPIER GFLSGPIERG FMSGPLDRVG LFSGPLDKPN SDHHHQFQRS FSHGLALRVG SRKRSLVRIL RRAISKTMSR
201: GQNSIVAPIK SVKDSDNWGI RSEKSRNLHN ENLTVNSLNF SSEVSLDDDV SLENQNLQWA QGKAGEDRVH VVVSEEHGWL FVGIYDGFNG PDAPDYLLSH
301: LYPVVHRELK GLLWDDSNVE SKSQDLERSN GDESCSNQEK DETCERWWRC EWDRESQDLD RRLKEQISRR SGSDRLTNHS EVLEALSQAL RKTEEAYLDT
401: ADKMLDENPE LALMGSCVLV MLMKGEDIYV MNVGDSRAVL GQKSEPDYWL AKIRQDLERI NEETMMNDLE GCEGDQSSLV PNLSAFQLTV DHSTNIEEEV
501: ERIRNEHPDD VTAVTNERVK GSLKVTRAFG AGFLKQPKWN NALLEMFQID YVGKSPYINC LPSLYHHRLG SKDRFLILSS DGLYQYFTNE EAVSEVELFI
601: TLQPEGDPAQ HLVQELLFRA AKKAGMDFHE LLEIPQGERR RYHDDVSIVV ISLEGRMWKS CV

Arabidopsis Description

PLL5PLL5 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF5]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.