Factsheet for VIT_05s0020g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50856	Soybean	cytosol, nucleus, peroxisome	75.35	72.88
Bra022166.1-P	Field mustard	cytosol	33.4	72.1
KRH02249	Soybean	cytosol, nucleus, peroxisome	74.75	71.76
KRH37115	Soybean	cytosol, nucleus, peroxisome	56.26	69.19
PGSC0003DMT400011807	Potato	nucleus	67.99	68.95
GSMUA_Achr10P...	Banana	cytosol	47.32	67.04
AT3G16560.1	Thale cress	cytosol, nucleus, peroxisome	65.01	66.33
CDY43107	Canola	cytosol, nucleus, peroxisome	63.82	65.51
CDX92079	Canola	cytosol, nucleus, peroxisome	64.21	65.12
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	66.4	64.11
Solyc01g066870.2.1	Tomato	cytosol, nucleus, peroxisome	40.16	63.72
Solyc12g099600.1.1	Tomato	plasma membrane	68.39	59.83
VIT_01s0150g00510.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	61.03	58.59
VIT_03s0038g02650.t01	Wine grape	mitochondrion	22.66	28.72
VIT_05s0077g00830.t01	Wine grape	extracellular	21.07	28.65
VIT_08s0040g02970.t01	Wine grape	cytosol	21.27	28.23
VIT_13s0067g03500.t01	Wine grape	cytosol, mitochondrion, plastid	20.87	27.7
VIT_03s0091g00470.t01	Wine grape	mitochondrion	20.68	27.3
VIT_07s0129g00520.t01	Wine grape	cytosol	20.08	26.3
VIT_18s0001g09390.t01	Wine grape	mitochondrion	19.09	25.4
VIT_08s0007g00310.t01	Wine grape	nucleus	33.4	25.23
VIT_08s0007g06510.t01	Wine grape	mitochondrion	19.28	24.87
VIT_00s0434g00020.t01	Wine grape	cytosol	19.88	24.51
VIT_06s0004g04600.t01	Wine grape	nucleus	34.79	24.17
VIT_02s0012g01100.t01	Wine grape	cytosol, nucleus, plastid	35.98	23.0
VIT_07s0005g02390.t01	Wine grape	mitochondrion, nucleus, peroxisome	34.99	21.7

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	Gene3D:3.60.40.10	ProteinID:CBI26073	ProteinID:CBI26073.3
UniProt:D7T6F2	EMBL:FN595749	GO:GO:0003674	GO:GO:0003824	GO:GO:0004722	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:IPR001932	InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF309	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC70948
UniParc:UPI0001BE2ACD	ArrayExpress:VIT_05s0020g01460	EnsemblPlantsGene:VIT_05s0020g01460	EnsemblPlants:VIT_05s0020g01460.t01	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:3160887..3165334

Molecular Weight (calculated)

55193.3 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.162

Length

503 amino acids

Sequence
(BLAST)

001: MIRLPKIMEE ELMDSPKGDI KVSFGYQCNG NNGITCEVSN GYEIMPRINV RRTSSFSCLS GAALSANATL ANTNICNGLI GAEKLPSWDS PNSFRRVPSS
101: PSLSKLDILS SSLQSSLSNL SCSPSTQSEA LENDSYSLKS MSAPSRSDGF LNAMEVQVAG GAAGEDRVQA VCSEENGWLF CAIYDGFNGR DAADFLAGTL
201: YETIVCYFNL LDWESEQEFV RTSNGLGLDG SLQNILDDVI SDSFRHRVLD SLQRSLSQAE HDFLYMVEQE MEDRPDLVSV GSCVLVVLLI GNDLYTVNLG
301: DSRAVLATYT KDYMNEDERL KAIQLTDSHT VDNEVERNQL LCDHPDDPSV IVGGRVKGKL KVTRALGVGY LKQKKLNDAL MGILRVRNLL SPPYISTQPS
401: LNVHNISKSD HFVIVGSDGL FDFFSNDEAV ELVHSYILTN PSGDPAKFLL EQLVLRAANC AGFSMEELMS IPAGRRRKYH DDVTVIVIIL GTNHRTSKAS
501: TCL

Best Arabidopsis Sequence Match ( AT3G16560.1 )
(BLAST)

001: MQEGTDPYGE IEISFGYQCN NKKIGIPEDK IADGREVLGG FRLQKTSSFS CLSGAALSGN PTLANTNICN GVIGSEILPS LDSPKSFRKV PSSPALSKLD
101: ILSPSLHGSM VSLSCSSSTS PSPPEPESCY LTSMSSPSSV NEGFLLSAME VQVAGGAAGE DRVQAVCSEE NGWLFCAIYD GFNGRDAADF LACTLYESIV
201: FHLQLLDRQM KQTKSDDDGE KLELLSNISN VDYSSTDLFR QGVLDCLNRA LFQAETDFLR MVEQEMEERP DLVSVGSCVL VTLLVGKDLY VLNLGDSRAV
301: LATYNGNKKL QAVQLTEDHT VDNEVEEARL LSEHLDDPKI VIGGKIKGKL KVTRALGVGY LKKEKLNDAL MGILRVRNLL SPPYVSVEPS MRVHKITESD
401: HFVIVASDGL FDFFSNEEAI GLVHSFVSSN PSGDPAKFLL ERLVAKAAAR AGFTLEELTN VPAGRRRRYH DDVTIMVITL GTDQRTSKAS TFV

Arabidopsis Description

Protein phosphatase 2C family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VFN3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.