Factsheet for PGSC0003DMT400011807

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099600.1.1	Tomato	plasma membrane	97.38	84.0
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	79.44	75.62
VIT_05s0020g01460.t01	Wine grape	cytosol, peroxisome, plastid	68.95	67.99
Bra022166.1-P	Field mustard	cytosol	31.05	66.09
KRH37115	Soybean	cytosol, nucleus, peroxisome	51.21	62.1
KRH02249	Soybean	cytosol, nucleus, peroxisome	65.52	62.02
GSMUA_Achr10P...	Banana	cytosol	44.35	61.97
KRH50856	Soybean	cytosol, nucleus, peroxisome	64.92	61.92
AT3G16560.1	Thale cress	cytosol, nucleus, peroxisome	60.48	60.85
CDY43107	Canola	cytosol, nucleus, peroxisome	59.68	60.41
CDX92079	Canola	cytosol, nucleus, peroxisome	60.08	60.08
Os04t0403701-01	Rice	cytosol, nucleus, peroxisome	55.04	52.5
HORVU2Hr1G071850.2	Barley	nucleus	54.84	52.41
TraesCS2B01G307000.1	Wheat	nucleus	54.84	52.41
EES12087	Sorghum	cytosol	55.04	52.4
TraesCS2A01G290500.1	Wheat	nucleus	54.64	52.22
Zm00001d000124_P003	Maize	cytosol, peroxisome, plastid	54.84	52.21
Zm00001d025323_P004	Maize	cytosol, peroxisome, plastid	54.44	51.82
TraesCS2D01G288400.1	Wheat	nucleus	54.64	49.72
PGSC0003DMT400060005	Potato	cytosol	20.77	26.82
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	32.06	26.5
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	19.56	26.15
PGSC0003DMT400058098	Potato	mitochondrion	20.56	25.69
PGSC0003DMT400005115	Potato	cytosol	19.56	25.66
PGSC0003DMT400066175	Potato	cytosol	19.35	25.6
PGSC0003DMT400068706	Potato	mitochondrion	19.76	25.59
PGSC0003DMT400028715	Potato	cytosol	19.35	25.53
PGSC0003DMT400009248	Potato	mitochondrion	19.96	25.38
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	32.26	25.36
PGSC0003DMT400064207	Potato	cytosol	18.95	25.27
PGSC0003DMT400046486	Potato	mitochondrion	19.56	25.0
PGSC0003DMT400029771	Potato	cytosol, mitochondrion, peroxisome	19.35	24.87
PGSC0003DMT400029765	Potato	mitochondrion	19.96	24.21
PGSC0003DMT400067223	Potato	mitochondrion	18.15	24.06
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	18.75	23.85
PGSC0003DMT400078173	Potato	nucleus	33.47	23.31
PGSC0003DMT400052881	Potato	nucleus	34.27	21.77
PGSC0003DMT400045127	Potato	nucleus	34.88	21.68
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	13.31	19.41
PGSC0003DMT400029770	Potato	mitochondrion	16.13	18.78
PGSC0003DMT400029776	Potato	cytosol	6.05	16.3

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.3	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1A076	PFAM:PF00481
EnsemblPlantsGene:PGSC0003DMG401004637	PGSC:PGSC0003DMG401004637	EnsemblPlants:PGSC0003DMT400011807	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF309	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI0002948F44
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2C 40 [Source:PGSC_GENE;Acc:PGSC0003DMG401004637]

Coordinates

chr12:+:60241291..60245789

Molecular Weight (calculated)

53785.6 Da

IEP (calculated)

5.231

GRAVY (calculated)

-0.207

Length

496 amino acids

Sequence
(BLAST)

001: MGGQSIADSG GQIKISFGYH CNNSTDDSGE ESDGIDVRPG SKLRRANSSF SCLSGAALSA NATLANTNIC NGLFGAEILP ALDSPTSFRR IPSSPSFSKL
101: DLLSSSFQSS LSNLSCSPSS PSELAEDNSS SLRSTSAPSR CEGFLNATEV KIAGGAAGED RVQAVCSEEN DSLFCGIYDG FNGRDAADFL AGTLYETIRH
201: YLGLLDCELE RESKVSDRVG FYGLPYLEVE KSCTSFKQRV LNSLEQALIQ AENDFLHMVE QEMDNRPDLV SIGSCVLVVL LLGKNMYVLN AGDSRAVLAT
301: YGEGIDANSD GRLQAVQLTV SHTVDDESER IQLLKNHPED PSTIVGGKVK GRLKVTRALG VGYLKKKSMN DALMGILRVR NLVSPPYVTV QPSRTVHEIS
401: SSDHFVVLGS DGLFDFFNND DVVKLVHSYI QRYPFGDPSK FLVEQLVMRA ADCAGFSKEE LMSIPAGRRR KYHDDVTVMV IILGMNKRTS KASTRL

Best Arabidopsis Sequence Match ( AT3G16560.1 )
(BLAST)

001: MQEGTDPYGE IEISFGYQCN NKKIGIPEDK IADGREVLGG FRLQKTSSFS CLSGAALSGN PTLANTNICN GVIGSEILPS LDSPKSFRKV PSSPALSKLD
101: ILSPSLHGSM VSLSCSSSTS PSPPEPESCY LTSMSSPSSV NEGFLLSAME VQVAGGAAGE DRVQAVCSEE NGWLFCAIYD GFNGRDAADF LACTLYESIV
201: FHLQLLDRQM KQTKSDDDGE KLELLSNISN VDYSSTDLFR QGVLDCLNRA LFQAETDFLR MVEQEMEERP DLVSVGSCVL VTLLVGKDLY VLNLGDSRAV
301: LATYNGNKKL QAVQLTEDHT VDNEVEEARL LSEHLDDPKI VIGGKIKGKL KVTRALGVGY LKKEKLNDAL MGILRVRNLL SPPYVSVEPS MRVHKITESD
401: HFVIVASDGL FDFFSNEEAI GLVHSFVSSN PSGDPAKFLL ERLVAKAAAR AGFTLEELTN VPAGRRRRYH DDVTIMVITL GTDQRTSKAS TFV

Arabidopsis Description

Protein phosphatase 2C family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VFN3]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.