Factsheet for PGSC0003DMT400029770

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078820.1.1	Tomato	mitochondrion	85.45	79.13
PGSC0003DMT400029771	Potato	cytosol, mitochondrion, peroxisome	71.6	79.02
PGSC0003DMT400029765	Potato	mitochondrion	73.24	76.28
PGSC0003DMT400029776	Potato	cytosol	28.17	65.22
PGSC0003DMT400029763	Potato	cytosol, mitochondrion	52.58	57.44
VIT_08s0007g06510.t01	Wine grape	mitochondrion	45.77	50.0
GSMUA_Achr8P13470_001	Banana	mitochondrion	44.13	49.21
KRH38102	Soybean	mitochondrion	43.66	48.31
KRG95384	Soybean	mitochondrion	43.9	47.83
Os02t0685600-01	Rice	mitochondrion, plasma membrane	43.19	47.55
KXG26992	Sorghum	cytosol, mitochondrion	43.19	46.82
TraesCS2D01G456600.2	Wheat	mitochondrion	42.49	46.41
TraesCS2A01G456300.2	Wheat	cytosol, mitochondrion, peroxisome, plastid	42.49	46.41
KXG30997	Sorghum	mitochondrion	42.25	46.39
TraesCS2B01G478400.2	Wheat	cytosol, mitochondrion, peroxisome, plastid	42.25	46.15
Bra009224.1-P	Field mustard	cytosol, mitochondrion	37.32	46.09
KRH71850	Soybean	mitochondrion	39.44	45.9
HORVU2Hr1G104630.4	Barley	cytosol, mitochondrion, nucleus, peroxisome	42.02	45.9
AT5G06750.3	Thale cress	cytosol, mitochondrion	41.55	45.04
Bra028720.1-P	Field mustard	mitochondrion	40.14	44.53
CDY40818	Canola	mitochondrion	12.44	42.06
PGSC0003DMT400068706	Potato	mitochondrion	37.32	41.51
PGSC0003DMT400066175	Potato	cytosol	33.8	38.4
PGSC0003DMT400028715	Potato	cytosol	33.8	38.3
PGSC0003DMT400064207	Potato	cytosol	33.33	38.17
PGSC0003DMT400046486	Potato	mitochondrion	34.74	38.14
PGSC0003DMT400009248	Potato	mitochondrion	34.74	37.95
PGSC0003DMT400013942	Potato	cytosol, mitochondrion	32.86	37.74
PGSC0003DMT400067223	Potato	mitochondrion	32.86	37.43
CDY51276	Canola	mitochondrion	7.28	37.35
PGSC0003DMT400058098	Potato	mitochondrion	34.27	36.78
PGSC0003DMT400005115	Potato	cytosol	32.63	36.77
PGSC0003DMT400060005	Potato	cytosol	32.39	35.94
PGSC0003DMT400029441	Potato	cytosol, nucleus, peroxisome	19.95	16.31
PGSC0003DMT400011807	Potato	nucleus	18.78	16.13
PGSC0003DMT400049278	Potato	cytosol, nucleus, peroxisome	20.42	14.5
PGSC0003DMT400022788	Potato	cytosol, nucleus, peroxisome	20.66	13.95
PGSC0003DMT400078173	Potato	nucleus	21.36	12.78
PGSC0003DMT400045127	Potato	nucleus	21.13	11.28
PGSC0003DMT400052881	Potato	nucleus	20.19	11.01
PGSC0003DMT400022786	Potato	cytosol, nucleus, peroxisome	6.81	8.53

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.4	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
InterPro:IPR001932	InterPro:IPR036457	UniProt:M1ATD6	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG401011442	PGSC:PGSC0003DMG401011442
EnsemblPlants:PGSC0003DMT400029770	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF239	SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI000295F7F3
SEG:seg	:	:	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG401011442]

Coordinates

chr10:+:58895334..58898174

Molecular Weight (calculated)

47214.9 Da

IEP (calculated)

4.281

GRAVY (calculated)

-0.439

Length

426 amino acids

Sequence
(BLAST)

001: MVSWLDRTVS ACCQPLGRYV GLSSGVLGGE DYPLLWYRDL EKHSCGEFSF AVVQANQVCE DYGHVEPGRE GTFVGVYDGH GGLDASRFAC DNLSRHLITL
101: AREKGTIDEE VLNNTFAATE DGFLSIVERE FHVDPAIAST GCCCLVGVIW KRTLYVANLG DCRAVLGHTG RFNRIFAEQL TNDHNARIKE VRDELRALHP
201: DDPNIVSCVR RTWRVKSIIQ VTRAIGDAFL KKPEFALGAI PLRRPGIARR LVLSALNVAA RARKLKYGDL MNYDKGVRRA FHDDITVVVI FIDHEMLNDS
301: LTVPGMSVRG FVDTHRPSDF NIEQEVATET EPTETEPTGT EATETEATET ELTETEPTET EPTEIEPTGT EPTETEATET EATETEPTEI EPTETEPTGT
401: EPTETESTET EPTETEPTET ELSETV

Best Arabidopsis Sequence Match ( AT3G17090.1 )
(BLAST)

001: MSGSLMNLFS LCFKPFGHVC DNSEAGSGGG GGVSGGTGGE GKDGLLWFRD LGKYCGGDFS MAVIQANQVL EDQSQVESGN FGTFVGVYDG HGGPEAARYV
101: CDHLFNHFRE ISAETQGVVT RETIERAFHA TEEGFASIVS ELWQEIPNLA TVGTCCLVGV IYQNTLFVAS LGDSRVVLGK KGNCGGLSAI QLSTEHNANN
201: EDIRWELKDL HPDDPQIVVF RHGVWRVKGI IQVSRSIGDM YMKRPEFNKE PISQKFRIAE PMKRPLMSAT PTILSHPLHP NDSFLIFASD GLWEHLTNEK
301: AVEIVHNHPR AGSAKRLIKA ALHEAARKRE MRYSDLRKID KKVRRHFHDD ITVIVVFLNH DLISRGHINS TQDTTVSIRS ALEH

Arabidopsis Description

Probable protein phosphatase 2C 42 [Source:UniProtKB/Swiss-Prot;Acc:Q0V7V2]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.