CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91074
KRG99384
KRH10001
KRH23330
KRH28403
KRH35699
KRH44167
KRH47141
KRH51981
KRH61282
KRH77072

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	KRH10001	AT3G13710.1	21798944
AT3G43230.1	KRH23330	AT3G13710.1	21798944
AT3G43230.1	KRH44167	AT3G13710.1	21798944
AT3G43230.1	KRH47141	AT3G13710.1	21798944
AT3G43230.1	KRG99384	AT4G33350.1	21798944
AT3G43230.1	KRH51981	AT4G33350.1	21798944
AT3G43230.1	KRH61282	AT4G33350.1	21798944
AT3G43230.1	KRG91074	AT4G33920.1	21798944
AT3G43230.1	KRH28403	AT4G33920.1	21798944
AT3G43230.1	KRH35699	AT4G33920.1	21798944
AT3G43230.1	KRH77072	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19396	Soybean	cytosol	89.67	89.67
VIT_11s0016g00400.t01	Wine grape	cytosol	71.69	73.05
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	14.88	72.73
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.16	71.05
GSMUA_Achr3P10170_001	Banana	mitochondrion	61.36	70.38
GSMUA_AchrUn_...	Banana	extracellular	10.54	68.0
Solyc07g017500.2.1	Tomato	cytosol	67.56	67.42
AT3G43230.1	Thale cress	cytosol	66.74	66.6
Os07t0616900-01	Rice	cytosol	60.33	63.2
TraesCS2A01G168100.1	Wheat	cytosol	60.12	63.12
TraesCS2B01G194100.1	Wheat	cytosol	60.12	63.12
TraesCS2D01G175500.1	Wheat	cytosol	59.92	62.91
GSMUA_Achr8P30460_001	Banana	cytosol	61.16	62.84
HORVU2Hr1G030860.2	Barley	cytosol	59.5	62.47
OQU90261	Sorghum	cytosol	59.09	62.04
Zm00001d022148_P001	Maize	cytosol	58.68	61.47
EER96209	Sorghum	cytosol	61.98	60.48
Zm00001d019348_P001	Maize	cytosol	61.36	59.88
HORVU3Hr1G016350.1	Barley	cytosol	60.95	59.84
TraesCS3A01G091400.1	Wheat	cytosol	60.74	59.51
Os07t0272400-01	Rice	cytosol	60.95	59.36
TraesCS3D01G091300.1	Wheat	cytosol	60.54	59.07
TraesCS3B01G106600.1	Wheat	cytosol	60.33	58.87
PGSC0003DMT400041172	Potato	cytosol	6.2	56.6
OQU77712	Sorghum	cytosol	37.4	56.21
CDY30955	Canola	cytosol	61.78	52.36
CDY44837	Canola	cytosol	61.36	49.67
Bra019445.1-P	Field mustard	cytosol	61.78	46.72
KRH21202	Soybean	cytosol	44.21	39.63
KRH11072	Soybean	cytosol	43.59	39.07

Protein Annotations

EntrezGene:100780209	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02010309	EnsemblPlantsGene:GLYMA_17G045300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0032587	GO:GO:0035091	GO:GO:0046872
GO:GO:1900027	UniProt:I1MS36	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:KRH02544	ProteinID:KRH02544
ProteinID:KRH02544.1	ProteinID:KRH02545.1	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629
PANTHER:PTHR15629:SF25	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000233E259	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:3357451..3361013

Molecular Weight (calculated)

52294.2 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.169

Length

484 amino acids

Sequence
(BLAST)

001: MASSDGRVTY SSLSKLENEN THFGYDDMNH HGESVWSEPM PGTPCGQLGP TFSNKESLYQ FPSEDDDLFD GGYESGDDAR GIVPSNRPPE VNLKNVLSGI
101: FAILTGRTKV PSITANQQLP SSNVSFLDSG KNGDVFLDSS VYTPSAPPLC LPNGSDYSSY KEVLEADPPE WLPDSSTTVC MQCSAPFTAL TRGRHHCRFC
201: GGIFCRTCTK GRCLMPVGFR ERNPQRVCDA CYDRLDPLQG VLINTISNAA QGAKHDVMDW TCARGWINLP IGLSMEHEIY KASNTLRNYC QVAKSNPEKS
301: IPLTVLKSAK GLAILTVAKA GALVSYKLGT GLVVARRSDG SWSAPSAIFS LGLGWGAQIG GELMDFIVVL RDMKAVKTFC SHMHFSLGAG CSAAAGPVGR
401: VLEADIRAGD RGSGMCYTYS CSKGAFVGVS LEGNIVATRM DANLRFYGDP YLTTSDILLG MVDRPKAAQP MYASLQELYS CLRF

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.