Factsheet for GSMUA_Achr1P21800_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
golgi 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P21550_001
GSMUA_Achr3P02220_001
GSMUA_Achr4P14220_001
GSMUA_Achr6P11170_001
GSMUA_Achr6P30510_001
GSMUA_Achr7P09070_001
GSMUA_Achr9P27070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT3G43230.1	GSMUA_Achr6P30510_001	AT4G33350.1	21798944
AT3G43230.1	GSMUA_Achr9P27070_001	AT4G33350.1	21798944
AT3G43230.1	GSMUA_Achr2P21550_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr3P02220_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr4P14220_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr6P11170_001	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30460_001	Banana	cytosol	85.86	18.05
GSMUA_Achr3P10170_001	Banana	mitochondrion	74.75	17.54
AT3G43230.1	Thale cress	cytosol	81.82	16.7
TraesCS2D01G175500.1	Wheat	cytosol	75.76	16.27
TraesCS2B01G194100.1	Wheat	cytosol	75.76	16.27
TraesCS2A01G168100.1	Wheat	cytosol	75.76	16.27
HORVU2Hr1G030860.2	Barley	cytosol	75.76	16.27
Zm00001d022148_P001	Maize	cytosol	73.74	15.8
Os07t0616900-01	Rice	cytosol	73.74	15.8
OQU90261	Sorghum	cytosol	72.73	15.62
Solyc07g017500.2.1	Tomato	cytosol	75.76	15.46
VIT_11s0016g00400.t01	Wine grape	cytosol	71.72	14.95
KRH02544	Soybean	cytosol	72.73	14.88
KRH19396	Soybean	cytosol	72.73	14.88
GSMUA_Achr5P06610_001	Banana	cytosol	68.69	14.14
CDY30955	Canola	cytosol	73.74	12.78
GSMUA_Achr7P13820_001	Banana	cytosol	65.66	12.4
CDY44837	Canola	cytosol	74.75	12.37
Bra019445.1-P	Field mustard	cytosol	73.74	11.41
GSMUA_AchrUn_...	Banana	extracellular	1.01	1.33
GSMUA_AchrUn_...	Banana	cytosol, extracellular	1.01	1.32
PGSC0003DMT400041172	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21800_001	EnsemblPlants:GSMUA_Achr1T21800_001	EnsemblPlantsGene:GSMUA_Achr1G21800_001	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	UniParc:UPI0002956AA7
UniProt:M0S1Y8	MapMan:35.2	:	:	:	:

Description

Putative Protein YSC84 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21800_001]

Coordinates

chr1:-:16367688..16368129

Molecular Weight (calculated)

10951.6 Da

IEP (calculated)

10.323

GRAVY (calculated)

0.323

Length

99 amino acids

Sequence
(BLAST)

1: MRGWLNLPVG LSMEYEIYKA TNILRSYCQV DRFDPEKSIP WAVLKRAKGL AILTVVKVGA LLTYKVGTGL VISRRIDRSW SAPSAILSIG LGWGAQVCI

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.