Factsheet for GSMUA_Achr8P30460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P21550_001
GSMUA_Achr3P02220_001
GSMUA_Achr4P14220_001
GSMUA_Achr6P11170_001
GSMUA_Achr6P30510_001
GSMUA_Achr7P09070_001
GSMUA_Achr9P27070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT3G43230.1	GSMUA_Achr6P30510_001	AT4G33350.1	21798944
AT3G43230.1	GSMUA_Achr9P27070_001	AT4G33350.1	21798944
AT3G43230.1	GSMUA_Achr2P21550_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr3P02220_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr4P14220_001	AT4G33920.1	21798944
AT3G43230.1	GSMUA_Achr6P11170_001	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	18.05	85.86
GSMUA_AchrUn_...	Banana	cytosol, extracellular	12.31	76.32
GSMUA_AchrUn_...	Banana	extracellular	11.68	73.33
GSMUA_Achr3P10170_001	Banana	mitochondrion	63.27	70.62
Os07t0616900-01	Rice	cytosol	64.33	65.58
OQU90261	Sorghum	cytosol	63.91	65.29
VIT_11s0016g00400.t01	Wine grape	cytosol	65.82	65.26
Zm00001d022148_P001	Maize	cytosol	63.91	65.15
TraesCS2D01G175500.1	Wheat	cytosol	63.48	64.86
TraesCS2B01G194100.1	Wheat	cytosol	63.48	64.86
TraesCS2A01G168100.1	Wheat	cytosol	63.48	64.86
HORVU2Hr1G030860.2	Barley	cytosol	63.06	64.43
Solyc07g017500.2.1	Tomato	cytosol	63.48	61.65
KRH19396	Soybean	cytosol	63.06	61.36
KRH02544	Soybean	cytosol	62.84	61.16
AT3G43230.1	Thale cress	cytosol	61.78	60.0
PGSC0003DMT400041172	Potato	cytosol	6.37	56.6
CDY30955	Canola	cytosol	57.75	47.64
CDY44837	Canola	cytosol	57.75	45.48
GSMUA_Achr5P06610_001	Banana	cytosol	44.16	43.24
Bra019445.1-P	Field mustard	cytosol	58.17	42.81
GSMUA_Achr7P13820_001	Banana	cytosol	42.89	38.55

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G30460_001
EnsemblPlants:GSMUA_Achr8P30460_001	EnsemblPlants:GSMUA_Achr8T30460_001	InterPro:IPR013083	InterPro:IPR017455	UniProt:M0TUZ8	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	SUPFAM:SSF57903
UniParc:UPI000296B183	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

FYVE zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G30460_001]

Coordinates

chr8:-:32519354..32525052

Molecular Weight (calculated)

50941.7 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.088

Length

471 amino acids

Sequence
(BLAST)

001: MVTSEEITTY SALSKLDTAN HDDRERADFL VDHHSGSLSS PRGSRQDYLC QPSSKPDFPD NNSTQEPCFI SQNGANHKGN LKNVLSGLSA MVTSRNLVDG
101: AIQSQLNSSL DISFLSSELN GDSFLCPSVC MPSAPPLLGV ESVNYSAYKD ILAAEPPEWL PDSYSKVCMQ CNSPFTAITR GRHHCRFCGG IFCRDCTKGR
201: CLLPVKFQER NPQRVCDTCY DKLDSLQSIL INSNSNAVQS AKHDVTDWTC MRGWLNLPVG LSMEYEIYKA TNTLRSYCQV ARLNPEKSIP WSVLRGAKGL
301: AILTVVKVGA LLTYKVGSGL VVSRRVDGSW SAPSAILSVG LGWGAQIGGE LMDFIIVLHG SKVVKAFSSH MHISFGAGIS AAAGPVGRVF EADLRAGAKG
401: SGICYTYSCS KGAFVGVSME GNVVATRMDA NLRFYGDPYL TTGDILFGTV ERPKAAAPLY LALDELYSKV S

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.