Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | extracellular | 86.84 | 88.0 |
| GSMUA_Achr3P10170_001 | Banana | mitochondrion | 76.32 | 13.74 |
| GSMUA_Achr8P30460_001 | Banana | cytosol | 76.32 | 12.31 |
| VIT_11s0016g00400.t01 | Wine grape | cytosol | 75.0 | 12.0 |
| OQU90261 | Sorghum | cytosol | 71.05 | 11.71 |
| Os07t0616900-01 | Rice | cytosol | 71.05 | 11.69 |
| TraesCS2D01G175500.1 | Wheat | cytosol | 69.74 | 11.5 |
| TraesCS2B01G194100.1 | Wheat | cytosol | 69.74 | 11.5 |
| TraesCS2A01G168100.1 | Wheat | cytosol | 69.74 | 11.5 |
| HORVU2Hr1G030860.2 | Barley | cytosol | 68.42 | 11.28 |
| Zm00001d022148_P001 | Maize | cytosol | 68.42 | 11.26 |
| KRH02544 | Soybean | cytosol | 71.05 | 11.16 |
| KRH19396 | Soybean | cytosol | 71.05 | 11.16 |
| Solyc07g017500.2.1 | Tomato | cytosol | 71.05 | 11.13 |
| AT3G43230.1 | Thale cress | cytosol | 69.74 | 10.93 |
| CDY30955 | Canola | cytosol | 67.11 | 8.93 |
| GSMUA_Achr5P06610_001 | Banana | cytosol | 55.26 | 8.73 |
| CDY44837 | Canola | cytosol | 67.11 | 8.53 |
| GSMUA_Achr7P13820_001 | Banana | cytosol | 55.26 | 8.02 |
| Bra019445.1-P | Field mustard | cytosol | 67.11 | 7.97 |
| PGSC0003DMT400041172 | Potato | cytosol | 5.26 | 7.55 |
| GSMUA_Achr1P21800_001 | Banana | extracellular, golgi, plastid | 1.32 | 1.01 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP24120_001 | EnsemblPlants:GSMUA_AchrUn_randomT24120_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG24120_001 | InterPro:Ysc84_actin-binding | PANTHER:PTHR15629 | PANTHER:PTHR15629:SF25 |
| PFAM:PF04366 | UniParc:UPI000295752E | UniProt:M0UBX0 | MapMan:35.2 | : | : |
Description
Putative SH3 domain-containing protein PJ696.02 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24120_001]
Coordinates
chrchrUn_random:-:119740394..119740624
Molecular Weight (calculated)
8119.8 Da
IEP (calculated)
7.342
GRAVY (calculated)
0.353
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MDFIVVLHGS KAVKAFSSNM HISLGAGLSF AAGPVGRVFE ADLRAGDKGS GMCYTYSCSK GNFFLFYIDA CIQLND
001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
Arabidopsis Description
RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.