Factsheet for Solyc07g017500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107300.2.1
Solyc01g107310.2.1
Solyc03g121460.1.1
Solyc04g079000.2.1
Solyc10g049630.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	Solyc03g121460.1.1	AT3G13710.1	21798944
AT3G43230.1	Solyc04g079000.2.1	AT4G33350.1	21798944
AT3G43230.1	Solyc01g107300.2.1	AT4G33920.1	21798944
AT3G43230.1	Solyc01g107310.2.1	AT4G33920.1	21798944
AT3G43230.1	Solyc10g049630.1.1	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041172	Potato	cytosol	10.72	98.11
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	15.46	75.76
VIT_11s0016g00400.t01	Wine grape	cytosol	71.13	72.63
GSMUA_Achr3P10170_001	Banana	mitochondrion	61.86	71.09
GSMUA_AchrUn_...	Banana	cytosol, extracellular	11.13	71.05
GSMUA_AchrUn_...	Banana	extracellular	10.52	68.0
KRH02544	Soybean	cytosol	67.42	67.56
KRH19396	Soybean	cytosol	67.01	67.15
AT3G43230.1	Thale cress	cytosol	65.77	65.77
TraesCS2D01G175500.1	Wheat	cytosol	61.24	64.43
TraesCS2B01G194100.1	Wheat	cytosol	61.24	64.43
TraesCS2A01G168100.1	Wheat	cytosol	61.03	64.21
Os07t0616900-01	Rice	cytosol	60.62	63.64
HORVU2Hr1G030860.2	Barley	cytosol	60.41	63.56
OQU90261	Sorghum	cytosol	60.41	63.56
GSMUA_Achr8P30460_001	Banana	cytosol	61.65	63.48
Zm00001d022148_P001	Maize	cytosol	60.41	63.42
EER96209	Sorghum	cytosol	60.82	59.48
Zm00001d019348_P001	Maize	cytosol	60.0	58.67
Os07t0272400-01	Rice	cytosol	59.79	58.35
TraesCS3A01G091400.1	Wheat	cytosol	59.38	58.3
HORVU3Hr1G016350.1	Barley	cytosol	58.97	58.01
TraesCS3D01G091300.1	Wheat	cytosol	59.18	57.86
TraesCS3B01G106600.1	Wheat	cytosol	59.18	57.86
OQU77712	Sorghum	cytosol	36.49	54.97
CDY30955	Canola	cytosol	60.82	51.66
CDY44837	Canola	cytosol	60.62	49.16
Bra019445.1-P	Field mustard	cytosol	60.62	45.94
Solyc02g071980.2.1	Tomato	cytosol	42.89	30.14

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0032587	GO:GO:0035091	GO:GO:0046872	GO:GO:1900027	InterPro:IPR013083	InterPro:IPR017455
UniProt:K4CCG5	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25
SMART:SM00064	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc07g017500.2	EnsemblPlants:Solyc07g017500.2.1	UniParc:UPI000276BFD6	InterPro:Ysc84_actin-binding
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	:	:

Description

No Description!

Coordinates

chr7:+:7391210..7395554

Molecular Weight (calculated)

52463.4 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.123

Length

485 amino acids

Sequence
(BLAST)

001: MVKFEGKVVY SSLANLEKDN TKFQFVEDEV DEDSWGRVSE DSHAAGNSYP HGYPLIESDD VLDRSYGSGN VPYNFVPQSG PPEVNLRNVL SGLVAIVTGQ
101: NKVQVSNTVP QLPSSNVSFL GSGTNGDTFL HSSVYIPSAP PLVEPSAFNY SAYKDVLESE PPEWLPDSST TICMQCTAPF TAFTRGRHHC RFCGGVFCRT
201: CTKGKCLLPM KFREKNPQRV CDTCYDRLDP VQGVLINTIS NAVQVAKHDV MDWTSTRGWL NLPVGLSMEY EIYKSSNTLR TYAQVARLNP ERSIPGAVLK
301: GAKGLAILTV AKAGMLLTYK FGSGLVVARR SDGSWSAPSA ILSAGLGWGA QIGGELTDFI IVLHDSKAVK TFCSRMHFSL GAGCSAAAGP VGRVVEADLR
401: AGEKGSGICY TYSCSKGAFV GVSLEGNVVT TRMDTNLQFY GDPYLTTADI LLGTVERPKA GEPLYAALKD LYESFPLRLK GVLND

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.