Factsheet for Zm00001d019348_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d037747_P001
Zm00001d039455_P002
Zm00001d044931_P001
Zm00001d048131_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	Zm00001d037747_P001	AT3G13710.1	21798944
AT3G43230.1	Zm00001d039455_P002	AT3G13710.1	21798944
AT3G43230.1	Zm00001d044931_P001	AT4G33350.1	21798944
AT3G43230.1	Zm00001d048131_P001	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96209	Sorghum	cytosol	95.56	95.56
TraesCS3B01G106600.1	Wheat	cytosol	79.64	79.64
TraesCS3D01G091300.1	Wheat	cytosol	77.22	77.22
HORVU3Hr1G016350.1	Barley	cytosol	76.61	77.08
Os07t0272400-01	Rice	cytosol	77.02	76.86
TraesCS3A01G091400.1	Wheat	cytosol	76.01	76.32
OQU77712	Sorghum	cytosol	47.58	73.29
GSMUA_Achr3P10170_001	Banana	mitochondrion	61.49	72.27
VIT_11s0016g00400.t01	Wine grape	cytosol	61.09	63.79
KRH02544	Soybean	cytosol	59.88	61.36
KRH19396	Soybean	cytosol	59.48	60.95
AT3G43230.1	Thale cress	cytosol	59.48	60.82
Solyc07g017500.2.1	Tomato	cytosol	58.67	60.0
Zm00001d022148_P001	Maize	cytosol	55.04	59.09
PGSC0003DMT400041172	Potato	cytosol	5.24	49.06
CDY30955	Canola	cytosol	55.44	48.16
CDY44837	Canola	cytosol	55.44	45.99
Bra019445.1-P	Field mustard	cytosol	55.04	42.66
Zm00001d016234_P001	Maize	cytosol	40.73	37.9
Zm00001d053541_P002	Maize	cytosol	39.52	37.62
Zm00001d046304_P001	Maize	cytosol, plastid	38.71	27.63

Protein Annotations

EntrezGene:100284625	Gene3D:3.30.40.10	MapMan:35.2	UniProt:B6TVQ4	EMBL:EU969069	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	ProteinID:ONM52759.1	ProteinID:ONM52760.1
ProteinID:ONM52762.1	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000182E639	InterPro:Ysc84_actin-binding	EnsemblPlantsGene:Zm00001d019348	EnsemblPlants:Zm00001d019348_P001
EnsemblPlants:Zm00001d019348_T001	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING/FYVE/PHD-type zinc finger family protein

Coordinates

chr7:+:29123627..29128374

Molecular Weight (calculated)

53364.4 Da

IEP (calculated)

6.347

GRAVY (calculated)

-0.102

Length

496 amino acids

Sequence
(BLAST)

001: MSTRREVVLY HPLPAPGVTN NLKDGIQSKV METVGNAINS FDPNALPRHI EGALGTAGNL INSFEPKWSG KNEFDLNGEA DFLDGYECPD EYWGSAPVKA
101: HKPVNIKNLL GGVIAIIGRN LGNTEAEQPK DTKTSVSFLG SADDGNTFLH SSVYMPSAPP VLDEEALNYN IYRAVLEAEP PEWLPDSYAS ACMQCAALFT
201: ALTRGRHHCR FCGGIFCRAC SKGRSLLPAK FRERNPQRVC DACYDRLDPL QNLLINSVSN ASQTAKHDVM DWTCARGWLN FPIGLTMEHE IYKAANTLTS
301: YSQVARINPE KSIPHAVLSG ASGLAILTVV KAGAILTYKL GTGLVVARRS DGSWSAPSAI LSAGFGWGAQ VGGELMDFII VLRGPEAVQT FCSRMHFSLG
401: AGVSAAAGPV GRVAEADLRA GDKGSGVCYT YSCSKGAFIG VSLEGNLVAT RMDANLRFYG DPYLTTSDIL TGNVEQPNAA KFLYTALDNL YSGLDW

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.