Factsheet for HORVU3Hr1G016350.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2
HORVU4Hr1G069380.3
HORVU5Hr1G018930.2
HORVU7Hr1G035680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	HORVU1Hr1G028520.1	AT3G13710.1	21798944
AT3G43230.1	HORVU3Hr1G018940.2	AT3G13710.1	21798944
AT3G43230.1	HORVU7Hr1G035680.1	AT4G33350.1	21798944
AT3G43230.1	HORVU4Hr1G069380.3	AT4G33920.1	21798944
AT3G43230.1	HORVU5Hr1G018930.2	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G091300.1	Wheat	cytosol	92.49	91.94
TraesCS3A01G091400.1	Wheat	cytosol	90.87	90.69
TraesCS3B01G106600.1	Wheat	cytosol	90.06	89.52
Os07t0272400-01	Rice	cytosol	79.31	78.67
EER96209	Sorghum	cytosol	77.28	76.81
Zm00001d019348_P001	Maize	cytosol	77.08	76.61
GSMUA_Achr3P10170_001	Banana	mitochondrion	60.65	70.85
OQU77712	Sorghum	cytosol	41.99	64.29
VIT_11s0016g00400.t01	Wine grape	cytosol	59.63	61.89
KRH02544	Soybean	cytosol	59.84	60.95
KRH19396	Soybean	cytosol	59.43	60.54
HORVU2Hr1G030860.2	Barley	cytosol	56.39	60.3
AT3G43230.1	Thale cress	cytosol	58.01	58.97
Solyc07g017500.2.1	Tomato	cytosol	58.01	58.97
PGSC0003DMT400041172	Potato	cytosol	5.48	50.94
CDY30955	Canola	cytosol	54.36	46.94
CDY44837	Canola	cytosol	54.77	45.15
Bra019445.1-P	Field mustard	cytosol	54.97	42.34
HORVU7Hr1G088960.1	Barley	endoplasmic reticulum	40.97	33.28

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G016350
EnsemblPlants:HORVU3Hr1G016350.1	InterPro:IPR013083	InterPro:IPR017455	UniProt:M0Y1Q1	PFAM:PF01363	PFAM:PF04366
PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000296211E
InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:39500591..39504331

Molecular Weight (calculated)

53071.8 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.137

Length

493 amino acids

Sequence
(BLAST)

001: MTNSSEVPFY HSLPVKGAES SLKDQIHSKV MGTIGNVINS IDPKSLPQQA WETAGNAVNS LESKLSGQKP FDFDGGNDFL DGYECPDDYW DPELQRAEKP
101: VNIRNLLGGI VAIIGRTCKN DEIQQSKDTK SSVSFLGSSS DGDTFLHTSV YAPSAPPLLD EEALSYNIYR VVLEAEPPEW LPDSYADSCM QCSASFTAIT
201: CGRHHCRFCG GIFCRACSKG RCLLPAKFRE RNPQRVCDAC YDRLDPLQNL LINSVSNATQ TAKHDVMDWT SARGWLNLPI GLTLEHEIYK AAVSLRSYSQ
301: VSRINPGKSI PHAVLSGASG LAILTVVKAG AFLTYKLGTG LVVARRSDGS WSPPSAIASA GLGWGAQVGG ELMDFVIVLH GPEAVKTFSS RMHFSIGAGL
401: SAAAGPVGRV LEADVRAGNK GSGVCYTYSC SKGAFIGVSL EGNIVSTRMD ANLRFYGDPY LTTSDILMGN LDQPNAAKFL YKALDDLYSG LDC

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.