CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89408
EER95306
EES00126
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	EES00126	AT3G13710.1	21798944
AT3G43230.1	OQU77594	AT3G13710.1	21798944
AT3G43230.1	EER89408	AT4G33350.1	21798944
AT3G43230.1	EER95306	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96209	Sorghum	cytosol	75.16	48.79
Zm00001d019348_P001	Maize	cytosol	73.29	47.58
GSMUA_Achr3P10170_001	Banana	mitochondrion	61.18	46.68
HORVU3Hr1G016350.1	Barley	cytosol	64.29	41.99
TraesCS3B01G106600.1	Wheat	cytosol	64.29	41.73
TraesCS3D01G091300.1	Wheat	cytosol	63.66	41.33
Os07t0272400-01	Rice	cytosol	63.66	41.25
TraesCS3A01G091400.1	Wheat	cytosol	62.73	40.89
VIT_11s0016g00400.t01	Wine grape	cytosol	59.94	40.63
AT3G43230.1	Thale cress	cytosol	57.76	38.35
KRH02544	Soybean	cytosol	56.21	37.4
KRH19396	Soybean	cytosol	55.59	36.98
Solyc07g017500.2.1	Tomato	cytosol	54.97	36.49
OQU90261	Sorghum	cytosol	52.17	36.44
CDY30955	Canola	cytosol	54.04	30.47
CDY44837	Canola	cytosol	53.73	28.93
Bra019445.1-P	Field mustard	cytosol	53.73	27.03
EES04807	Sorghum	cytosol	40.99	24.81
EER89914	Sorghum	cytosol	38.51	23.22
PGSC0003DMT400041172	Potato	cytosol	0.93	5.66

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1Z5R1R0	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:OQU77712	ProteinID:OQU77712	ProteinID:OQU77712.1	PFAM:PF01363
PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25	SMART:SM00064	EnsemblPlantsGene:SORBI_3009G092020
SUPFAM:SSF57903	UniParc:UPI000B8BA61B	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:20876809..20880575

Molecular Weight (calculated)

35011.8 Da

IEP (calculated)

7.700

GRAVY (calculated)

-0.111

Length

322 amino acids

Sequence
(BLAST)

001: MLGSARSITA LTHALTPPHH LEGAMGAGRA ANLLGGVIAI IGRNLGNTEV ERPNDTKTNV SFLGSSDDVL DGEALNYNIY RAVLEAHQNG FLTPFIALTR
101: GRHHCRFCGG IFCRACSKRR SLLPAKFRER NPQRVCDACY DKLDPLQNLL INSVSNASQT AKHDVMDWTC ARGWLNLPVA LTMEHEIYKA ANTSSSYIQV
201: HKKILMQVAR INPEKSDGSW SAPSAIVYVG FGWGAHVFSG ELMDFIIVLR GPEAVQTSCS RMHFSLGAGV SAAAGPVGRV LEADLRTGDK ESGVCYTYSC
301: SKAGICGFFG EFDERLWAGE EQ

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.