Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P10170_001 | Banana | mitochondrion | 68.0 | 76.54 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular | 12.0 | 75.0 |
| GSMUA_AchrUn_... | Banana | extracellular | 11.37 | 72.0 |
| GSMUA_Achr1P21800_001 | Banana | extracellular, golgi, plastid | 14.95 | 71.72 |
| KRH02544 | Soybean | cytosol | 73.05 | 71.69 |
| Solyc07g017500.2.1 | Tomato | cytosol | 72.63 | 71.13 |
| KRH19396 | Soybean | cytosol | 72.42 | 71.07 |
| PGSC0003DMT400041172 | Potato | cytosol | 7.79 | 69.81 |
| AT3G43230.1 | Thale cress | cytosol | 70.11 | 68.66 |
| GSMUA_Achr8P30460_001 | Banana | cytosol | 65.26 | 65.82 |
| TraesCS2A01G168100.1 | Wheat | cytosol | 62.74 | 64.64 |
| TraesCS2B01G194100.1 | Wheat | cytosol | 62.74 | 64.64 |
| HORVU2Hr1G030860.2 | Barley | cytosol | 62.32 | 64.21 |
| Os07t0616900-01 | Rice | cytosol | 62.32 | 64.07 |
| TraesCS2D01G175500.1 | Wheat | cytosol | 62.11 | 63.99 |
| OQU90261 | Sorghum | cytosol | 61.26 | 63.12 |
| Zm00001d022148_P001 | Maize | cytosol | 60.84 | 62.55 |
| EER96209 | Sorghum | cytosol | 65.05 | 62.3 |
| Zm00001d019348_P001 | Maize | cytosol | 63.79 | 61.09 |
| TraesCS3A01G091400.1 | Wheat | cytosol | 63.16 | 60.73 |
| Os07t0272400-01 | Rice | cytosol | 62.95 | 60.16 |
| OQU77712 | Sorghum | cytosol | 40.63 | 59.94 |
| TraesCS3D01G091300.1 | Wheat | cytosol | 62.32 | 59.68 |
| HORVU3Hr1G016350.1 | Barley | cytosol | 61.89 | 59.63 |
| TraesCS3B01G106600.1 | Wheat | cytosol | 61.26 | 58.67 |
| CDY30955 | Canola | cytosol | 62.74 | 52.19 |
| CDY44837 | Canola | cytosol | 63.16 | 50.17 |
| Bra019445.1-P | Field mustard | cytosol | 62.95 | 46.72 |
| VIT_19s0014g00860.t01 | Wine grape | cytosol | 45.68 | 41.57 |
| VIT_10s0003g01800.t01 | Wine grape | cytosol | 43.16 | 39.05 |
Protein Annotations
| EntrezGene:100242383 | wikigene:100242383 | Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:CBI27749 | ProteinID:CBI27749.3 |
| UniProt:D7TC91 | EMBL:FN595756 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0032587 | GO:GO:0035091 | GO:GO:0046872 | GO:GO:1900027 | InterPro:IPR013083 | InterPro:IPR017455 |
| EntrezGene:LOC100242383 | wikigene:LOC100242383 | PFAM:PF01363 | PFAM:PF04366 | PFscan:PS50178 | PANTHER:PTHR15629 |
| PANTHER:PTHR15629:SF25 | SMART:SM00064 | SUPFAM:SSF57903 | TIGR:TC56377 | UniParc:UPI000198423C | ArrayExpress:VIT_11s0016g00400 |
| EnsemblPlantsGene:VIT_11s0016g00400 | EnsemblPlants:VIT_11s0016g00400.t01 | unigene:Vvi.7119 | RefSeq:XP_002274191 | RefSeq:XP_002274191.1 | InterPro:Ysc84_actin-binding |
| InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | : | : |
Description
No Description!
Coordinates
chr11:-:407973..411961
Molecular Weight (calculated)
51564.3 Da
IEP (calculated)
7.550
GRAVY (calculated)
-0.193
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSQGKVSY SSLSKLEKGN TNLYYDDDFS DSVWAMPQGS RSSKQDYSYQ YPLQSEDFVD EECDSIEEPC NSTQQYGMPP EVNLKNVLGG IFAILTGRNK
101: GIGDAGSQQS PTSNVSFLGS GKNGDSFLHP SVYIPSAPPL LEPSGINYSA YKEVLDAEPP EWVPDSSTTV CMQCTAPFTA LTRGRHHCRF CGGIFCRACT
201: KGRSLLPVKF RERNPQRVCD ACYDRLDPLQ NILINSISNA AQVAKHDVMD WTCTRGWLNL PVGLSMEHEI YKSANTLRSY YQVARLNPER SIPLAVLKGA
301: RGLAIITVAK AGMLVSYKLG TGLVVARRSD GSWSAPSAIF SVGLGWGAQI GGELMDFIIV LHGSKAVKTF CSRMHFSLGA GCSAAAGPVG RVLEADLRAG
401: DRGSGMCYTY SCSKGAFVGV SLEGNIVATR MDTNLRFYGD PYLTTADILL GTVDRPKAAE PLYTALKDLY SKLQH
101: GIGDAGSQQS PTSNVSFLGS GKNGDSFLHP SVYIPSAPPL LEPSGINYSA YKEVLDAEPP EWVPDSSTTV CMQCTAPFTA LTRGRHHCRF CGGIFCRACT
201: KGRSLLPVKF RERNPQRVCD ACYDRLDPLQ NILINSISNA AQVAKHDVMD WTCTRGWLNL PVGLSMEHEI YKSANTLRSY YQVARLNPER SIPLAVLKGA
301: RGLAIITVAK AGMLVSYKLG TGLVVARRSD GSWSAPSAIF SVGLGWGAQI GGELMDFIIV LHGSKAVKTF CSRMHFSLGA GCSAAAGPVG RVLEADLRAG
401: DRGSGMCYTY SCSKGAFVGV SLEGNIVATR MDTNLRFYGD PYLTTADILL GTVDRPKAAE PLYTALKDLY SKLQH
001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
Arabidopsis Description
RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.