Factsheet for VIT_18s0001g10590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00610.t01
VIT_05s0029g00050.t01
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	VIT_05s0029g00050.t01	AT3G24140.1	21798944
AT4G33350.1	VIT_02s0012g00610.t01	AT3G59840.1	21798944
AT4G33350.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99384	Soybean	plastid	43.32	76.92
KRH61282	Soybean	nucleus	69.68	74.81
KRH51981	Soybean	plastid	69.31	73.85
Solyc04g079000.2.1	Tomato	plastid	71.48	67.58
PGSC0003DMT400020682	Potato	plastid	71.12	67.24
Os06t0213200-01	Rice	cytosol, mitochondrion	13.72	65.52
CDX75346	Canola	plastid	63.18	65.3
Bra011434.1-P	Field mustard	plastid	62.45	65.04
AT4G33350.1	Thale cress	plastid	62.45	64.55
GSMUA_Achr6P30510_001	Banana	plastid	61.01	57.68
TraesCS7B01G076600.1	Wheat	plastid	54.15	55.76
TraesCS7D01G172300.1	Wheat	plastid	54.51	55.72
TraesCS7A01G171800.1	Wheat	plastid	53.79	54.78
GSMUA_Achr9P27070_001	Banana	plastid	25.99	52.94
EER89408	Sorghum	plastid	53.79	52.65
CDX68969	Canola	plastid	61.37	51.52
Zm00001d044931_P001	Maize	plastid	51.99	51.43
HORVU7Hr1G035680.1	Barley	cytosol	47.65	47.48
VIT_05s0062g00220.t01	Wine grape	cytosol	30.32	28.67

Protein Annotations

EntrezGene:100255735	wikigene:100255735	MapMan:23.1.3.6	Gene3D:3.40.1350.100	ProteinID:CCB45846	ProteinID:CCB45846.1
UniProt:F6GZZ6	EMBL:FN595227	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0015031
EntrezGene:LOC100255735	wikigene:LOC100255735	PFAM:PF04278	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	TIGR:TC59879
TIGR:TC69050	InterPro:Tic22-like	UniParc:UPI0001985454	ArrayExpress:VIT_18s0001g10590	EnsemblPlantsGene:VIT_18s0001g10590	EnsemblPlants:VIT_18s0001g10590.t01
RefSeq:XP_002284687	RefSeq:XP_002284687.1	RefSeq:XP_003634356	RefSeq:XP_003634356.1	RefSeq:XP_019072247.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:8887310..8899254

Molecular Weight (calculated)

30836.2 Da

IEP (calculated)

9.978

GRAVY (calculated)

-0.299

Length

277 amino acids

Sequence
(BLAST)

001: MEPPKPSNPL LSFSTFIHQH CLRLGAELAS RLDDTRRLAG NWPPPALRRS LPLSSLPFAS MSQEARGAKR DLGVALSSDH VAKSLAGTAV YTVSNSNNEF
101: VLISDPNGIK SIGLLCFRQE DAEAFLAQVQ SRTRELRSQA RVVPISLDQV YMLKVEGIAF RFLPDPVQIK NALELKAADI KSGFDGVPVF QSDLLVVKKK
201: NRRYCPIYFQ KEDIVKELSK VSRSSRGPGV TQHIMVGSLE DVLRKMETSE KNSGWEDLIF IPPGKSHSQH IQEVTKR

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.