Factsheet for VIT_05s0062g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58822	Soybean	cytosol	50.85	58.89
PGSC0003DMT400056320	Potato	plastid	51.54	56.77
Solyc09g092530.2.1	Tomato	plastid	50.85	56.65
KRH42720	Soybean	extracellular, plasma membrane	37.2	55.05
Bra028338.1-P	Field mustard	plastid	55.63	53.09
CDY18095	Canola	plastid	55.63	53.09
CDY66637	Canola	nucleus, plastid	56.66	52.53
AT3G23710.1	Thale cress	cytosol, plastid	55.29	51.76
Zm00001d019404_P001	Maize	plastid	47.78	49.12
Os07t0290800-01	Rice	plastid	48.46	48.63
EER96244	Sorghum	plastid	46.76	47.4
TraesCS3D01G290500.1	Wheat	plastid	45.73	46.85
TraesCS3A01G290700.1	Wheat	plastid	44.71	46.79
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	29.69	43.5
HORVU3Hr1G071890.1	Barley	endoplasmic reticulum, mitochondrion, plastid, vacuole	41.64	35.26
VIT_18s0001g10590.t01	Wine grape	plastid	28.67	30.32

Protein Annotations

EntrezGene:100245330	wikigene:100245330	MapMan:23.1.3.6	Gene3D:3.40.1350.100	ProteinID:CCB61764	ProteinID:CCB61764.1
UniProt:F6I4C7	EMBL:FN596745	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009536	GO:GO:0015031	EntrezGene:LOC100245330	wikigene:LOC100245330
PFAM:PF04278	PANTHER:PTHR33926	PANTHER:PTHR33926:SF1	InterPro:Tic22-like	UniParc:UPI00015CD059	ArrayExpress:VIT_05s0062g00220
EnsemblPlantsGene:VIT_05s0062g00220	EnsemblPlants:VIT_05s0062g00220.t01	unigene:Vvi.12652	RefSeq:XP_002268264	RefSeq:XP_002268264.1	:

Description

No Description!

Coordinates

chr5:+:18370304..18379616

Molecular Weight (calculated)

32331.7 Da

IEP (calculated)

9.205

GRAVY (calculated)

-0.348

Length

293 amino acids

Sequence
(BLAST)

001: MNFLKPKHLD TPSASKPPQL NLQQALTDIQ NHCSAFLSHF PNLPFDPKTH FESTISNLQN HAKRALRCPG KAPVWARIRG DGGGMPASAI EERLAGVPVY
101: ALSNSSDEFV LVSGVRTGKS LGLFCLKKED AETLLEQMKL MDPGMRQGSK VVAVALNKVF QLKLDGVAFR LMPDSTQVKN ALRVMEKAGF SDDGFSGVPV
201: FQSRSLILQS QDKKYRPVFF RKEDLENSLL SASNQQNRLN PAFRQGDIQV AVFEEIIKGM QENASRQWDD VVFIPPGFDA SISSPQQQAT ANG

Best Arabidopsis Sequence Match ( AT3G23710.1 )
(BLAST)

001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE

Arabidopsis Description

TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.