Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66637 | Canola | nucleus, plastid | 76.68 | 75.95 |
| Bra028338.1-P | Field mustard | plastid | 74.44 | 75.9 |
| CDY18095 | Canola | plastid | 74.44 | 75.9 |
| Solyc09g092530.2.1 | Tomato | plastid | 50.16 | 59.7 |
| PGSC0003DMT400056320 | Potato | plastid | 49.52 | 58.27 |
| VIT_05s0062g00220.t01 | Wine grape | cytosol | 51.76 | 55.29 |
| KRH58822 | Soybean | cytosol | 43.77 | 54.15 |
| KRH42720 | Soybean | extracellular, plasma membrane | 30.67 | 48.48 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 28.75 | 45.0 |
| Os07t0290800-01 | Rice | plastid | 41.53 | 44.52 |
| TraesCS3A01G290700.1 | Wheat | plastid | 39.3 | 43.93 |
| Zm00001d019404_P001 | Maize | plastid | 39.3 | 43.16 |
| TraesCS3D01G290500.1 | Wheat | plastid | 38.66 | 42.31 |
| EER96244 | Sorghum | plastid | 38.98 | 42.21 |
| HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 35.46 | 32.08 |
| AT4G33350.1 | Thale cress | plastid | 26.2 | 30.6 |
Protein Annotations
| MapMan:23.1.3.6 | Gene3D:3.40.1350.100 | EntrezGene:821952 | UniProt:A0A178V7Q4 | ProteinID:AEE76804.1 | ArrayExpress:AT3G23710 |
| EnsemblPlantsGene:AT3G23710 | RefSeq:AT3G23710 | TAIR:AT3G23710 | RefSeq:AT3G23710-TAIR-G | EnsemblPlants:AT3G23710.1 | TAIR:AT3G23710.1 |
| ProteinID:BAB01848.1 | UniProt:F4J469 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0031972 | RefSeq:NP_189013.1 | ProteinID:OAP02310.1 | PFAM:PF04278 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 | InterPro:Tic22-like | UniParc:UPI0000163500 | SEG:seg | : |
Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
Coordinates
chr3:+:8533848..8536541
Molecular Weight (calculated)
34577.0 Da
IEP (calculated)
8.690
GRAVY (calculated)
-0.439
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.