Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g092530.2.1 | Tomato | plastid | 42.5 | 32.32 |
| PGSC0003DMT400056320 | Potato | plastid | 42.5 | 31.95 |
| KRH58822 | Soybean | cytosol | 40.0 | 31.62 |
| EER96244 | Sorghum | plastid | 45.5 | 31.49 |
| Zm00001d019404_P001 | Maize | plastid | 44.0 | 30.88 |
| CDY18095 | Canola | plastid | 46.0 | 29.97 |
| VIT_05s0062g00220.t01 | Wine grape | cytosol | 43.5 | 29.69 |
| Bra028338.1-P | Field mustard | plastid | 45.5 | 29.64 |
| Os07t0290800-01 | Rice | plastid | 43.0 | 29.45 |
| CDY66637 | Canola | nucleus, plastid | 46.5 | 29.43 |
| AT3G23710.1 | Thale cress | cytosol, plastid | 45.0 | 28.75 |
| TraesCS3A01G290700.1 | Wheat | plastid | 38.5 | 27.5 |
| TraesCS3D01G290500.1 | Wheat | plastid | 37.5 | 26.22 |
| HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 40.5 | 23.41 |
| KRH42720 | Soybean | extracellular, plasma membrane | 21.5 | 21.72 |
| GSMUA_Achr6P30510_001 | Banana | plastid | 27.5 | 18.77 |
| GSMUA_Achr9P27070_001 | Banana | plastid | 8.5 | 12.5 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP23680_001 | EnsemblPlants:GSMUA_AchrUn_randomT23680_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG23680_001 | Gene3D:3.40.1350.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009536 | GO:GO:0015031 |
| InterPro:Tic22-like | ncoils:Coil | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 | PFAM:PF04278 | SEG:seg |
| UniParc:UPI000294EEFC | UniProt:M0UBS6 | MapMan:23.1.3.6 | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23680_001]
Coordinates
chrchrUn_random:+:116015110..116016700
Molecular Weight (calculated)
21854.5 Da
IEP (calculated)
10.781
GRAVY (calculated)
-0.175
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPWLKPRN QNPPPSIPAK PNPFLFTIQS HLNAFSDASS SLKAHLDSAV ETLRNRARRA VLSGHPHLPS PPPGPPPLPW ARISPAGCSG VRRFDLAMST
101: EVMEERLAGV PVYALSNAAE EFVLVSGVRT GKSLGLFCFK KEDAEALLEQ MRSMNRDMRE GSKVVAVALN KVFQLKVDGV AFRFVPDSSQ VANAIKVRAR
101: EVMEERLAGV PVYALSNAAE EFVLVSGVRT GKSLGLFCFK KEDAEALLEQ MRSMNRDMRE GSKVVAVALN KVFQLKVDGV AFRFVPDSSQ VANAIKVRAR
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKVS
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKVS
Arabidopsis Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.