Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019404_P001 | Maize | plastid | 90.31 | 91.58 |
| TraesCS3A01G290700.1 | Wheat | plastid | 72.32 | 74.64 |
| Os07t0290800-01 | Rice | plastid | 73.01 | 72.26 |
| TraesCS3D01G290500.1 | Wheat | plastid | 70.93 | 71.68 |
| HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 65.4 | 54.62 |
| Solyc09g092530.2.1 | Tomato | plastid | 47.4 | 52.09 |
| PGSC0003DMT400056320 | Potato | plastid | 47.75 | 51.88 |
| KRH58822 | Soybean | cytosol | 44.64 | 50.99 |
| KRH42720 | Soybean | extracellular, plasma membrane | 32.18 | 46.97 |
| VIT_05s0062g00220.t01 | Wine grape | cytosol | 47.4 | 46.76 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 31.49 | 45.5 |
| Bra028338.1-P | Field mustard | plastid | 43.94 | 41.37 |
| CDY18095 | Canola | plastid | 43.94 | 41.37 |
| CDY66637 | Canola | nucleus, plastid | 43.94 | 40.19 |
| AT3G23710.1 | Thale cress | cytosol, plastid | 42.21 | 38.98 |
| EER89408 | Sorghum | plastid | 34.6 | 35.34 |
Protein Annotations
| MapMan:23.1.3.6 | Gene3D:3.40.1350.100 | EntrezGene:8057304 | UniProt:C5X3P1 | EnsemblPlants:EER96244 | ProteinID:EER96244 |
| ProteinID:EER96244.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009536 | GO:GO:0015031 | PFAM:PF04278 | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 |
| EnsemblPlantsGene:SORBI_3002G109600 | unigene:Sbi.6546 | InterPro:Tic22-like | UniParc:UPI0001A83B64 | RefSeq:XP_002459723.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:+:13350537..13354560
Molecular Weight (calculated)
31547.5 Da
IEP (calculated)
8.469
GRAVY (calculated)
-0.312
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFRFEFPWL KNPNTTAGTS NRDTNPSPRF PNPFLPIQAH VTSFLSSLPQ ALPPPPPWAR IPSPSSASTS VALPTAEIEE RLAGVPVYAL ANAAQEFVLV
101: SSTRVGGQGG EGVRVRPPPA LGLLCFRKED ADALLEQMEG DMRAGSSVVP VALNKVIQLK SDGVAFRFLP DSSQVANAIK LMQDEGLYAR EGFPGVPVFQ
201: SRSLVLMSDN KRYRPVFFRK EDLDNSLHRT SRDQQKPNPA VRFGDTQVSS LEDIIKSMKD SSSSKWDDVV FIPPGFDLAT GSTPSHLSK
101: SSTRVGGQGG EGVRVRPPPA LGLLCFRKED ADALLEQMEG DMRAGSSVVP VALNKVIQLK SDGVAFRFLP DSSQVANAIK LMQDEGLYAR EGFPGVPVFQ
201: SRSLVLMSDN KRYRPVFFRK EDLDNSLHRT SRDQQKPNPA VRFGDTQVSS LEDIIKSMKD SSSSKWDDVV FIPPGFDLAT GSTPSHLSK
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
Arabidopsis Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.