Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G290500.1 | Wheat | plastid | 87.86 | 86.01 |
| EER96244 | Sorghum | plastid | 74.64 | 72.32 |
| Zm00001d019404_P001 | Maize | plastid | 72.14 | 70.88 |
| Os07t0290800-01 | Rice | plastid | 71.07 | 68.15 |
| HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 82.5 | 66.76 |
| Solyc09g092530.2.1 | Tomato | plastid | 47.14 | 50.19 |
| PGSC0003DMT400056320 | Potato | plastid | 47.5 | 50.0 |
| KRH58822 | Soybean | cytosol | 42.86 | 47.43 |
| VIT_05s0062g00220.t01 | Wine grape | cytosol | 46.79 | 44.71 |
| KRH42720 | Soybean | extracellular, plasma membrane | 30.71 | 43.43 |
| Bra028338.1-P | Field mustard | plastid | 44.64 | 40.72 |
| CDY18095 | Canola | plastid | 44.64 | 40.72 |
| CDY66637 | Canola | nucleus, plastid | 44.64 | 39.56 |
| AT3G23710.1 | Thale cress | cytosol, plastid | 43.93 | 39.3 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 27.5 | 38.5 |
| TraesCS7A01G171800.1 | Wheat | plastid | 36.43 | 37.5 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G290700.1 | EnsemblPlantsGene:TraesCS3A01G290700 | Gene3D:3.40.1350.100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009536 | GO:GO:0015031 | InterPro:Tic22-like |
| PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 | PFAM:PF04278 | SEG:seg | MapMan:23.1.3.6 | : |
Description
No Description!
Coordinates
chr3A:-:519763846..519769717
Molecular Weight (calculated)
30366.3 Da
IEP (calculated)
7.677
GRAVY (calculated)
-0.239
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFDFPWLNK AASTSTPNPS LSKPNNPNPF LPIQTHLTSF VSSLPLPRAI APPWARIPSP SSSAALPVAE IEGRLAGVPV YALANSAQEF MLVSKTHGGG
101: DVGGSARRPP ALGMLCFRRE DADMLLAQMD DDMRAGSTVV PVALNKVIQL KSDGVAFRFL PDPSQVANAI KLMQDGGEFM NEGFPGVPVF QSRSLVLRND
201: NKRYRPVFFR KEDLDKSLHR ASSDQQKPIP AVRIGDTQVS SLEDIITSMK DSSSSKWDDA VFIPPGFDIA IGSEPSHLNK
101: DVGGSARRPP ALGMLCFRRE DADMLLAQMD DDMRAGSTVV PVALNKVIQL KSDGVAFRFL PDPSQVANAI KLMQDGGEFM NEGFPGVPVF QSRSLVLRND
201: NKRYRPVFFR KEDLDKSLHR ASSDQQKPIP AVRIGDTQVS SLEDIITSMK DSSSSKWDDA VFIPPGFDIA IGSEPSHLNK
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
Arabidopsis Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.