CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18095	Canola	plastid	89.24	91.86
AT3G23710.1	Thale cress	cytosol, plastid	75.95	76.68
Solyc09g092530.2.1	Tomato	plastid	50.0	60.08
PGSC0003DMT400056320	Potato	plastid	49.05	58.27
VIT_05s0062g00220.t01	Wine grape	cytosol	52.53	56.66
KRH58822	Soybean	cytosol	44.3	55.34
KRH42720	Soybean	extracellular, plasma membrane	31.96	51.01
Os07t0290800-01	Rice	plastid	43.04	46.58
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	29.43	46.5
TraesCS3A01G290700.1	Wheat	plastid	39.56	44.64
Zm00001d019404_P001	Maize	plastid	40.19	44.56
EER96244	Sorghum	plastid	40.19	43.94
TraesCS3D01G290500.1	Wheat	plastid	39.24	43.36
HORVU3Hr1G071890.1	Barley	endoplasmic reticulum, mitochondrion, plastid, vacuole	35.76	32.66
CDX75346	Canola	plastid	27.22	32.09
CDX68969	Canola	plastid	27.22	26.06

Protein Annotations

EnsemblPlants:CDY66637	EnsemblPlantsGene:GSBRNA2T00055472001	Gene3D:3.40.1350.100	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF1	PFAM:PF04278	ProteinID:CDY66637	ProteinID:CDY66637.1
SEG:seg	UniParc:UPI0004EB11D3	UniProt:A0A078JMP3	MapMan:23.1.3.6	:	:

Description

BnaCnng51730DBnaCnng51730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMP3]

Coordinates

chrLK035377:-:4648..6869

Molecular Weight (calculated)

34789.1 Da

IEP (calculated)

9.106

GRAVY (calculated)

-0.482

Length

316 amino acids

Sequence
(BLAST)

001: MDSNVSSSSK QRKQLTLQQS FSNIQTQCSD LLNNVSKTLN PLFNHNSSPH HHPNNIFSAL DSLRTQAKQA LDSGFSRFAS GNAPPLWARI SDDGGKTHVA
101: AVAPVRRSSG PGLSADDMEE RLAGVPVYAL SNSNEEFVLV SGTATGKSLG LLFCKEEDAE ALLNQMKAMD PRMRKEGSKV VALALSKVFQ LKVNGVAFRL
201: IPESTQVKNA LKERKTAGFT DDDFNGVPVF QSKSLILRSD NKSYRPVFFR KEDLEKSLTR ASRQQNRLNP ALKPGDIQVA VFEEIVKGMK ENATSNWDDI
301: VFIPPGFEVS TEETKD

Best Arabidopsis Sequence Match ( AT3G23710.1 )
(BLAST)

001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE

Arabidopsis Description

TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.