CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028338.1-P	Field mustard	plastid	98.05	98.05
CDY66637	Canola	nucleus, plastid	91.86	89.24
AT3G23710.1	Thale cress	cytosol, plastid	75.9	74.44
Solyc09g092530.2.1	Tomato	plastid	51.47	60.08
PGSC0003DMT400056320	Potato	plastid	50.49	58.27
VIT_05s0062g00220.t01	Wine grape	cytosol	53.09	55.63
KRH58822	Soybean	cytosol	45.28	54.94
KRH42720	Soybean	extracellular, plasma membrane	32.57	50.51
Os07t0290800-01	Rice	plastid	44.3	46.58
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	29.97	46.0
TraesCS3A01G290700.1	Wheat	plastid	40.72	44.64
Zm00001d019404_P001	Maize	plastid	41.37	44.56
EER96244	Sorghum	plastid	41.37	43.94
TraesCS3D01G290500.1	Wheat	plastid	40.39	43.36
HORVU3Hr1G071890.1	Barley	endoplasmic reticulum, mitochondrion, plastid, vacuole	36.81	32.66
CDX75346	Canola	plastid	28.01	32.09
CDX68969	Canola	plastid	27.69	25.76

Protein Annotations

EnsemblPlants:CDY18095	EnsemblPlantsGene:GSBRNA2T00002588001	Gene3D:3.40.1350.100	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF1	PFAM:PF04278	ProteinID:CDY18095	ProteinID:CDY18095.1
UniParc:UPI0004EDD71A	UniProt:A0A078FUC1	MapMan:23.1.3.6	:	:	:

Description

BnaA01g23560DBnaA01g23560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUC1]

Coordinates

chrLK032082:-:333711..335663

Molecular Weight (calculated)

33776.9 Da

IEP (calculated)

8.687

GRAVY (calculated)

-0.460

Length

307 amino acids

Sequence
(BLAST)

001: MDSNVSSSSK QQKHLTLQQS FSNIQTQCSD LLNNVSKTLN PLFNPNKNNI FSALDSLRAQ AKQALDSGFS RFASGNAPPL WARISDDGGK THVAPVRRSS
101: GPGLSADDME ERLAGVPVYA LSNSNEEFVL VSGTATGKSL GLLFCKEEDA EALLNQMKAM DPRMRKEGSK VVALALSKVF QLKVNGVAFR LIPESTQVQN
201: ALKERKTAGF TDDDFNGVPV FQSKSLILRS DNKSYRPVFF RKEDLEKSLA RASRQQNRLN PALKPGDIQV AVFEEIVKGM KENATSNWDD IVFIPPGFEV
301: STEETKD

Best Arabidopsis Sequence Match ( AT3G23710.1 )
(BLAST)

001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE

Arabidopsis Description

TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.