Factsheet for Solyc09g092530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056320	Potato	plastid	96.96	95.86
KRH58822	Soybean	cytosol	53.99	56.13
KRH42720	Soybean	extracellular, plasma membrane	40.68	54.04
CDY18095	Canola	plastid	60.08	51.47
Bra028338.1-P	Field mustard	plastid	59.7	51.14
VIT_05s0062g00220.t01	Wine grape	cytosol	56.65	50.85
AT3G23710.1	Thale cress	cytosol, plastid	59.7	50.16
CDY66637	Canola	nucleus, plastid	60.08	50.0
Os07t0290800-01	Rice	plastid	53.61	48.29
Zm00001d019404_P001	Maize	plastid	52.09	48.07
EER96244	Sorghum	plastid	52.09	47.4
TraesCS3A01G290700.1	Wheat	plastid	50.19	47.14
TraesCS3D01G290500.1	Wheat	plastid	50.57	46.5
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	32.32	42.5
HORVU3Hr1G071890.1	Barley	endoplasmic reticulum, mitochondrion, plastid, vacuole	44.87	34.1
Solyc04g079000.2.1	Tomato	plastid	31.94	28.67

Protein Annotations

EnsemblPlants:Solyc09g092530.2.1	EnsemblPlantsGene:Solyc09g092530.2	Gene3D:3.40.1350.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009536	GO:GO:0015031	InterPro:Tic22-like
PANTHER:PTHR33926	PANTHER:PTHR33926:SF1	PFAM:PF04278	SEG:seg	UniParc:UPI000276BD74	UniProt:K4CWS9
MapMan:23.1.3.6	:	:	:	:	:

Description

Protein TIC 22-like, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G23710) UniProtKB/Swiss-Prot;Acc:F4J469]

Coordinates

chr9:-:71584087..71587987

Molecular Weight (calculated)

29307.8 Da

IEP (calculated)

9.719

GRAVY (calculated)

-0.406

Length

263 amino acids

Sequence
(BLAST)

001: MNFFKWKQSS SSPATPPHLQ LQQSFKNLQT QFTNFLQTTI PQLNTPQNSP LWAKIGVKKQ SLSTETIEER LGGVPVYALS NASQEFVLVS GVSTGKSLGL
101: FCFSEADAEA LRQQMESMDP SMRNGSRVVP VALNKVFQLK VDGVAFRLIP EASQVKNAIK ERERTGTTDE SFYGVPVFQS RSLILRSQNK RYRPVFFRKE
201: DLESSLVRAS QQQGRLNPAL KGDIQVGVLE DIIQGMKDSS TSQWDDVVFV PPGFDVSADP SQK

Best Arabidopsis Sequence Match ( AT3G23710.1 )
(BLAST)

001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE

Arabidopsis Description

TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.