Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH58822 | Soybean | cytosol | 80.3 | 62.85 |
Solyc09g092530.2.1 | Tomato | plastid | 54.04 | 40.68 |
PGSC0003DMT400056320 | Potato | plastid | 53.54 | 39.85 |
VIT_05s0062g00220.t01 | Wine grape | cytosol | 55.05 | 37.2 |
Zm00001d019404_P001 | Maize | plastid | 47.47 | 32.98 |
CDY18095 | Canola | plastid | 50.51 | 32.57 |
Bra028338.1-P | Field mustard | plastid | 50.51 | 32.57 |
EER96244 | Sorghum | plastid | 46.97 | 32.18 |
CDY66637 | Canola | nucleus, plastid | 51.01 | 31.96 |
Os07t0290800-01 | Rice | plastid | 46.46 | 31.51 |
TraesCS3A01G290700.1 | Wheat | plastid | 43.43 | 30.71 |
AT3G23710.1 | Thale cress | cytosol, plastid | 48.48 | 30.67 |
TraesCS3D01G290500.1 | Wheat | plastid | 42.42 | 29.37 |
KRH61282 | Soybean | nucleus | 32.32 | 24.81 |
KRH51981 | Soybean | plastid | 32.32 | 24.62 |
KRG99384 | Soybean | plastid | 18.18 | 23.08 |
GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 21.72 | 21.5 |
HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 37.37 | 21.39 |
Protein Annotations
EMBL:ACUP02004823 | EnsemblPlants:KRH42720 | EnsemblPlantsGene:GLYMA_08G107200 | Gene3D:3.40.1350.100 | GO:GO:0005575 | GO:GO:0006810 |
GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Tic22-like | ncoils:Coil |
PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 | PFAM:PF04278 | ProteinID:KRH42720 | ProteinID:KRH42720.1 | SEG:seg |
TMHMM:TMhelix | UniParc:UPI0006ED8EDD | UniProt:A0A0R0IK61 | MapMan:23.1.3.6 | : | : |
Description
hypothetical protein
Coordinates
chr8:+:8241428..8244541
Molecular Weight (calculated)
22065.6 Da
IEP (calculated)
8.732
GRAVY (calculated)
-0.037
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: VSLGLGLFLF CFSKDDAEAL LSQVTLIDPH ARQGSKVVPV ALNKVLPLSL SVSVLYFSLA FGLLCFLLQV FQLKVNSVAF RLIPEFSQVK NALKEREKSG
101: FASSGFSGVP VFQSRNLILK SQSKRFRPLF SRKEDLENTL KSAAREQNKL NSTMRKGDIQ VATLEDVIKE MKENSTSNWD DVIFIPPGFD VSDDSNEQ
101: FASSGFSGVP VFQSRNLILK SQSKRFRPLF SRKEDLENTL KSAAREQNKL NSTMRKGDIQ VATLEDVIKE MKENSTSNWD DVIFIPPGFD VSDDSNEQ
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
Arabidopsis Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.