Factsheet for Zm00001d019404_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96244	Sorghum	plastid	91.58	90.31
TraesCS3A01G290700.1	Wheat	plastid	70.88	72.14
Os07t0290800-01	Rice	plastid	72.28	70.55
TraesCS3D01G290500.1	Wheat	plastid	68.77	68.53
Solyc09g092530.2.1	Tomato	plastid	48.07	52.09
PGSC0003DMT400056320	Potato	plastid	48.42	51.88
HORVU3Hr1G071890.1	Barley	endoplasmic reticulum, mitochondrion, plastid, vacuole	62.81	51.73
KRH58822	Soybean	cytosol	45.26	50.99
VIT_05s0062g00220.t01	Wine grape	cytosol	49.12	47.78
KRH42720	Soybean	extracellular, plasma membrane	32.98	47.47
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	30.88	44.0
Bra028338.1-P	Field mustard	plastid	44.56	41.37
CDY18095	Canola	plastid	44.56	41.37
CDY66637	Canola	nucleus, plastid	44.56	40.19
AT3G23710.1	Thale cress	cytosol, plastid	43.16	39.3
Zm00001d044931_P001	Maize	plastid	33.68	34.29

Protein Annotations

EMBL:BT037240	EnsemblPlants:Zm00001d019404_P001	EnsemblPlants:Zm00001d019404_T001	EnsemblPlantsGene:Zm00001d019404	EntrezGene:100216723	Gene3D:3.40.1350.100
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009536	GO:GO:0015031	InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF1	PFAM:PF04278
ProteinID:ONM52853.1	SEG:seg	UniParc:UPI00017B6F4F	UniProt:B4FJF2	MapMan:23.1.3.6	:

Description

Protein TIC 22-like chloroplastic

Coordinates

chr7:+:32444519..32449528

Molecular Weight (calculated)

31030.8 Da

IEP (calculated)

7.516

GRAVY (calculated)

-0.312

Length

285 amino acids

Sequence
(BLAST)

001: MPFRFQFPWL KNPTTNGGTS NIDTNPSPRF PNPFLPIQAH VTSFLSSFPR ALPPPPPWAR ITSPASTSGA LPTSEIEERL AGVPVYALAN AAQEFVLVSS
101: TRVGGQGGES VSPTQALGLL CFRKEDADAL LEQMDGDMRA GSGVVPVALN KVIQMKSDGV AFRFLPDSSQ VANAIKLMQD EGLYAGEGFP GVPVFQSRSL
201: VLMSDNKRYR PVFFRKEDLD NSLHRTSRDQ QKPNPAVRFG DTQVSSLEDI IKSMKDSSSS KWDDVVFIPP GFDLATGSTP SQLRK

Best Arabidopsis Sequence Match ( AT3G23710.1 )
(BLAST)

001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE

Arabidopsis Description

TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.