Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18095 | Canola | plastid | 98.05 | 98.05 |
| AT3G23710.1 | Thale cress | cytosol, plastid | 75.9 | 74.44 |
| Solyc09g092530.2.1 | Tomato | plastid | 51.14 | 59.7 |
| PGSC0003DMT400056320 | Potato | plastid | 50.16 | 57.89 |
| VIT_05s0062g00220.t01 | Wine grape | cytosol | 53.09 | 55.63 |
| KRH58822 | Soybean | cytosol | 45.28 | 54.94 |
| KRH42720 | Soybean | extracellular, plasma membrane | 32.57 | 50.51 |
| Os07t0290800-01 | Rice | plastid | 44.3 | 46.58 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 29.64 | 45.5 |
| TraesCS3A01G290700.1 | Wheat | plastid | 40.72 | 44.64 |
| Zm00001d019404_P001 | Maize | plastid | 41.37 | 44.56 |
| EER96244 | Sorghum | plastid | 41.37 | 43.94 |
| TraesCS3D01G290500.1 | Wheat | plastid | 40.39 | 43.36 |
| HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 36.81 | 32.66 |
| Bra011434.1-P | Field mustard | plastid | 27.04 | 31.2 |
Protein Annotations
| EnsemblPlants:Bra028338.1 | EnsemblPlants:Bra028338.1-P | EnsemblPlantsGene:Bra028338 | Gene3D:3.40.1350.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009536 | GO:GO:0015031 |
| InterPro:Tic22-like | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 | PFAM:PF04278 | UniParc:UPI00025437D2 | UniProt:M4EHS3 |
| MapMan:23.1.3.6 | : | : | : | : | : |
Description
AT3G23710 (E=5e-132) | chloroplast inner membrane import protein Tic22, putative
Coordinates
chrA01:-:18410383..18412482
Molecular Weight (calculated)
33785.9 Da
IEP (calculated)
8.690
GRAVY (calculated)
-0.451
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNVSSSSK QQKHLTLQQS FSNIQTQCSD LLNNVSKTLN PLFNPNSNNI FSALDSFRAQ AKQALDSGFS RFASGNTPPL WARISDDGGK THVAPIRRSS
101: GPGLSADDME ERLAGVPVYA LSNSNEEFVL VSGTATGKSL GLLFCKAEDA EALLNQMKAM DPRMRKEGSK VVALALSKVF QLKVNGVAFR LIPESTQVQN
201: ALKERKTAGF TDDDFNGVPV FQSKSLILRS DNKSYRPVFF RKEDLEKSLT RASRQQNRLN PALKPGDIQV AVFEEIVKGM KENATSNWDD IVFIPPGFEV
301: STEETKD
101: GPGLSADDME ERLAGVPVYA LSNSNEEFVL VSGTATGKSL GLLFCKAEDA EALLNQMKAM DPRMRKEGSK VVALALSKVF QLKVNGVAFR LIPESTQVQN
201: ALKERKTAGF TDDDFNGVPV FQSKSLILRS DNKSYRPVFF RKEDLEKSLT RASRQQNRLN PALKPGDIQV AVFEEIVKGM KENATSNWDD IVFIPPGFEV
301: STEETKD
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
Arabidopsis Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.