Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g092530.2.1 | Tomato | plastid | 95.86 | 96.96 |
| KRH58822 | Soybean | cytosol | 53.01 | 55.73 |
| KRH42720 | Soybean | extracellular, plasma membrane | 39.85 | 53.54 |
| VIT_05s0062g00220.t01 | Wine grape | cytosol | 56.77 | 51.54 |
| CDY18095 | Canola | plastid | 58.27 | 50.49 |
| Bra028338.1-P | Field mustard | plastid | 57.89 | 50.16 |
| AT3G23710.1 | Thale cress | cytosol, plastid | 58.27 | 49.52 |
| CDY66637 | Canola | nucleus, plastid | 58.27 | 49.05 |
| Zm00001d019404_P001 | Maize | plastid | 51.88 | 48.42 |
| Os07t0290800-01 | Rice | plastid | 53.01 | 48.29 |
| EER96244 | Sorghum | plastid | 51.88 | 47.75 |
| TraesCS3A01G290700.1 | Wheat | plastid | 50.0 | 47.5 |
| TraesCS3D01G290500.1 | Wheat | plastid | 50.38 | 46.85 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 31.95 | 42.5 |
| HORVU3Hr1G071890.1 | Barley | endoplasmic reticulum, mitochondrion, plastid, vacuole | 44.74 | 34.39 |
| PGSC0003DMT400020682 | Potato | plastid | 32.33 | 29.35 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400056320 | EnsemblPlantsGene:PGSC0003DMG400021879 | EntrezGene:102588619 | Gene3D:3.40.1350.100 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009536 | GO:GO:0015031 |
| InterPro:Tic22-like | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF1 | PFAM:PF04278 | PGSC:PGSC0003DMG400021879 | RefSeq:XP_006358762.1 |
| SEG:seg | UniParc:UPI0002960498 | UniProt:M1BZA1 | MapMan:23.1.3.6 | : | : |
Description
Chloroplast inner membrane import protein Tic22 [Source:PGSC_GENE;Acc:PGSC0003DMG400021879]
Coordinates
chr9:-:59940197..59947344
Molecular Weight (calculated)
29442.0 Da
IEP (calculated)
9.719
GRAVY (calculated)
-0.376
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLFKSKQSS SSPAAPPHLQ LQQTFKNLQT HFTNFLQTTI PQLNTLNSSQ NSPLWAKIGV KKQSLSTETI EERLGGVPVY ALSNASQEFV LVSGVSTGKS
101: LGLFCFSEAD AEALRQQMES MDPSMRNGSR VVPVALNKVF QLKVDGVAFR LIPEASQVKN AIKERERTGT TDESFYGVPV FQSRSLILRS QNKRYRPVFF
201: RKEDLESSLV RASQQQGRLN PALKGDIQVG VLEDIIQGMK DSSASQWDDV VFVPPGFDVS ADPSQK
101: LGLFCFSEAD AEALRQQMES MDPSMRNGSR VVPVALNKVF QLKVDGVAFR LIPEASQVKN AIKERERTGT TDESFYGVPV FQSRSLILRS QNKRYRPVFF
201: RKEDLESSLV RASQQQGRLN PALKGDIQVG VLEDIIQGMK DSSASQWDDV VFVPPGFDVS ADPSQK
001: MNSNIFPPSK QQNELNNIQQ SFSNLQSQCS NLLLNVSQTL NPLFNANTNN NKPNIFSALN SFRDQAKQAL DSRISRFNSG KAPVWARISD DGGGARAQVT
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
101: VPIRGSGKGL SADAIEERLA GVPVYALSNS NEEFVLVSGT SSGKSLGLLF CKEEDAETLL KEMKSMDPRM RKEGSKVVAL ALSKVFQLKV NGVAFRLIPE
201: STQVKNALKE RKTAGIDDDD FHGVPVFQSK SLILRSENMS YRPVFFRKED LEKSLIRASS QQNRLNPALK PGDIQVAVFE DIVKGMREST TSNWDDIVFI
301: PPGFEVSTEQ TQE
Arabidopsis Description
TIC22LTic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.