Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g04360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59840.1 | VIT_03s0038g04360.t01 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003393.1-P | Field mustard | plastid | 65.98 | 68.82 |
| Bra007481.1-P | Field mustard | cytosol, plastid | 64.95 | 68.48 |
| PGSC0003DMT400062222 | Potato | cytosol | 71.13 | 67.65 |
| AT3G59840.1 | Thale cress | cytosol, plastid | 67.01 | 67.01 |
| Solyc08g077280.1.1 | Tomato | cytosol | 70.1 | 66.67 |
| KRH28253 | Soybean | cytosol | 64.95 | 64.29 |
| KRH77243 | Soybean | mitochondrion | 63.92 | 59.62 |
| Os05t0500450-00 | Rice | mitochondrion | 55.67 | 54.55 |
| HORVU1Hr1G066520.2 | Barley | mitochondrion | 55.67 | 52.94 |
| TraesCS1A01G319500.1 | Wheat | mitochondrion | 55.67 | 52.94 |
| TraesCS1D01G319300.1 | Wheat | mitochondrion | 55.67 | 52.94 |
| TraesCS1B01G331800.1 | Wheat | mitochondrion | 55.67 | 51.92 |
| Zm00001d038607_P001 | Maize | plastid | 51.55 | 49.51 |
| EES19768 | Sorghum | mitochondrion, plastid | 52.58 | 47.66 |
Protein Annotations
| ArrayExpress:VIT_02s0012g00610 | EMBL:AM461418 | EMBL:FN596247 | EnsemblPlants:VIT_02s0012g00610.t01 | EnsemblPlantsGene:VIT_02s0012g00610 | EntrezGene:100253981 |
| EntrezGene:LOC100253981 | ProteinID:CAN83312 | ProteinID:CAN83312.1 | ProteinID:CBI33943 | ProteinID:CBI33943.3 | RefSeq:XP_002282023 |
| RefSeq:XP_002282023.1 | TIGR:TC64139 | TIGR:TC66459 | unigene:Vvi.3592 | UniParc:UPI0001524631 | UniProt:A5BJC2 |
| wikigene:100253981 | wikigene:LOC100253981 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2:+:6504376..6504853
Molecular Weight (calculated)
10413.3 Da
IEP (calculated)
4.505
GRAVY (calculated)
-0.379
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MGLLSWWKPS QKPTSETKKP DPKPGSPPEI PGMNGAVEVP RPQATPDVTV FEFGSVAASS DKVTLAGYCP VSDDLEPCRW EILPASGSDA PQFRVVF
1: MGILSWFTGS PKPSQSETSK PEMIQMPKSE TPAPGMNGAI EVPRPDRATV FEFGSVAATG DRVTLAGYCP VSDDLEPCRW EILPADGKDA PQFRVVF
Arabidopsis Description
Allyl alcohol dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ93]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.