CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59840.1	KRH52586	AT1G22920.1	21798944
AT3G59840.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28253	Soybean	cytosol	85.58	90.82
VIT_02s0012g00610.t01	Wine grape	cytosol, plastid	59.62	63.92
Bra003393.1-P	Field mustard	plastid	56.73	63.44
Bra007481.1-P	Field mustard	cytosol, plastid	54.81	61.96
AT3G59840.1	Thale cress	cytosol, plastid	56.73	60.82
PGSC0003DMT400062222	Potato	cytosol	56.73	57.84
Solyc08g077280.1.1	Tomato	cytosol	54.81	55.88
Os05t0500450-00	Rice	mitochondrion	47.12	49.49
HORVU1Hr1G066520.2	Barley	mitochondrion	46.15	47.06
TraesCS1A01G319500.1	Wheat	mitochondrion	46.15	47.06
Zm00001d038607_P001	Maize	plastid	45.19	46.53
TraesCS1B01G331800.1	Wheat	mitochondrion	46.15	46.15
TraesCS1D01G319300.1	Wheat	mitochondrion	45.19	46.08
EES19768	Sorghum	mitochondrion, plastid	45.19	43.93

Protein Annotations

EMBL:ACUP02000668	EnsemblPlants:KRH77243	EnsemblPlantsGene:GLYMA_01G201200	EntrezGene:100780185	ProteinID:KRH77243	ProteinID:KRH77243.1
UniParc:UPI00023378D1	UniProt:K7K4V1	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:53476471..53476785

Molecular Weight (calculated)

11285.4 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.354

Length

104 amino acids

Sequence
(BLAST)

001: MGLLWWRKGN KPQPQLQAKS SSIPKSNGTD ATKPLTEAPG MNGAVEVPRP PNTTVSIFEF GSVTASNDQV TLAGYCPVSE DLEPCRWEIL PAVQSNAPQF
101: RVVF

Best Arabidopsis Sequence Match ( AT3G59840.1 )
(BLAST)

1: MGILSWFTGS PKPSQSETSK PEMIQMPKSE TPAPGMNGAI EVPRPDRATV FEFGSVAATG DRVTLAGYCP VSDDLEPCRW EILPADGKDA PQFRVVF

Arabidopsis Description

Allyl alcohol dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ93]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.