Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012351.1-P | |
| Bra024548.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59840.1 | Bra012351.1-P | AT1G22920.1 | 21798944 |
| AT3G59840.1 | Bra024548.1-P | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003393.1-P | Field mustard | plastid | 91.3 | 90.32 |
| AT3G59840.1 | Thale cress | cytosol, plastid | 91.3 | 86.6 |
| VIT_02s0012g00610.t01 | Wine grape | cytosol, plastid | 68.48 | 64.95 |
| PGSC0003DMT400062222 | Potato | cytosol | 65.22 | 58.82 |
| KRH28253 | Soybean | cytosol | 61.96 | 58.16 |
| Solyc08g077280.1.1 | Tomato | cytosol | 64.13 | 57.84 |
| KRH77243 | Soybean | mitochondrion | 61.96 | 54.81 |
| HORVU1Hr1G066520.2 | Barley | mitochondrion | 56.52 | 50.98 |
| TraesCS1A01G319500.1 | Wheat | mitochondrion | 56.52 | 50.98 |
| TraesCS1D01G319300.1 | Wheat | mitochondrion | 56.52 | 50.98 |
| Os05t0500450-00 | Rice | mitochondrion | 54.35 | 50.51 |
| TraesCS1B01G331800.1 | Wheat | mitochondrion | 56.52 | 50.0 |
| Zm00001d038607_P001 | Maize | plastid | 53.26 | 48.51 |
| EES19768 | Sorghum | mitochondrion, plastid | 53.26 | 45.79 |
Protein Annotations
Description
AT3G59840 (E=9e-047) | unknown protein
Coordinates
chrA09:-:29414883..29415161
Molecular Weight (calculated)
9937.8 Da
IEP (calculated)
4.331
GRAVY (calculated)
-0.211
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MGILSWFTGS PKPSQPETTK TEIIQTPAPG MNGAIEVPRP DRATVFEFGS VAATGDRVTL AGYCPVSDDL EPCRWEILPA DGKDAPQFRV VF
1: MGILSWFTGS PKPSQSETSK PEMIQMPKSE TPAPGMNGAI EVPRPDRATV FEFGSVAATG DRVTLAGYCP VSDDLEPCRW EILPADGKDA PQFRVVF
Arabidopsis Description
Allyl alcohol dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ93]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.