Factsheet for Zm00001d038607_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59840.1	Zm00001d002027_P002	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19768	Sorghum	mitochondrion, plastid	89.11	84.11
HORVU1Hr1G066520.2	Barley	mitochondrion	74.26	73.53
TraesCS1A01G319500.1	Wheat	mitochondrion	74.26	73.53
TraesCS1B01G331800.1	Wheat	mitochondrion	75.25	73.08
Os05t0500450-00	Rice	mitochondrion	71.29	72.73
TraesCS1D01G319300.1	Wheat	mitochondrion	73.27	72.55
Bra007481.1-P	Field mustard	cytosol, plastid	48.51	53.26
Bra003393.1-P	Field mustard	plastid	48.51	52.69
KRH28253	Soybean	cytosol	50.49	52.04
VIT_02s0012g00610.t01	Wine grape	cytosol, plastid	49.51	51.55
PGSC0003DMT400062222	Potato	cytosol	51.49	50.98
Solyc08g077280.1.1	Tomato	cytosol	51.49	50.98
AT3G59840.1	Thale cress	cytosol, plastid	47.52	49.48
KRH77243	Soybean	mitochondrion	46.53	45.19

Protein Annotations

EMBL:EU960170	EMBL:EU976951	EnsemblPlants:Zm00001d038607_P001	EnsemblPlants:Zm00001d038607_T001	EnsemblPlantsGene:Zm00001d038607	EntrezGene:100286348
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	ProteinID:AQK87023.1	SEG:seg	UniParc:UPI000182CBEA	UniProt:B6T5A5	MapMan:35.2

Description

Allyl alcohol dehydrogenase-like protein

Coordinates

chr6:-:160895233..160895538

Molecular Weight (calculated)

10477.2 Da

IEP (calculated)

4.686

GRAVY (calculated)

0.018

Length

101 amino acids

Sequence
(BLAST)

001: MGLFSWWRGG RRGGAPPDQQ ASAVAGVVGT DVAASGTHGA VEVRRQRQAA DATVFEFGSA AESGAAVTLA GYCPVSDELE PCRWELVPAA VDGAPQFRIV
101: F

Best Arabidopsis Sequence Match ( AT3G59840.1 )
(BLAST)

1: MGILSWFTGS PKPSQSETSK PEMIQMPKSE TPAPGMNGAI EVPRPDRATV FEFGSVAATG DRVTLAGYCP VSDDLEPCRW EILPADGKDA PQFRVVF

Arabidopsis Description

Allyl alcohol dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ93]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.