Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g073150.2.1 | |
| Solyc11g017300.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59840.1 | Solyc06g073150.2.1 | AT1G22920.1 | 21798944 |
| AT3G59840.1 | Solyc11g017300.1.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400062222 | Potato | cytosol | 98.04 | 98.04 |
| VIT_02s0012g00610.t01 | Wine grape | cytosol, plastid | 66.67 | 70.1 |
| Bra007481.1-P | Field mustard | cytosol, plastid | 57.84 | 64.13 |
| AT3G59840.1 | Thale cress | cytosol, plastid | 58.82 | 61.86 |
| Bra003393.1-P | Field mustard | plastid | 55.88 | 61.29 |
| KRH28253 | Soybean | cytosol | 55.88 | 58.16 |
| HORVU1Hr1G066520.2 | Barley | mitochondrion | 54.9 | 54.9 |
| TraesCS1D01G319300.1 | Wheat | mitochondrion | 54.9 | 54.9 |
| KRH77243 | Soybean | mitochondrion | 55.88 | 54.81 |
| TraesCS1A01G319500.1 | Wheat | mitochondrion | 53.92 | 53.92 |
| TraesCS1B01G331800.1 | Wheat | mitochondrion | 54.9 | 53.85 |
| Os05t0500450-00 | Rice | mitochondrion | 50.0 | 51.52 |
| Zm00001d038607_P001 | Maize | plastid | 50.98 | 51.49 |
| EES19768 | Sorghum | mitochondrion, plastid | 51.96 | 49.53 |
Protein Annotations
| EnsemblPlants:Solyc08g077280.1.1 | EnsemblPlantsGene:Solyc08g077280.1 | SEG:seg | UniParc:UPI000276C2A8 | UniProt:K4CN88 | MapMan:35.2 |
Description
No Description!
Coordinates
chr8:-:61195375..61195683
Molecular Weight (calculated)
11090.1 Da
IEP (calculated)
4.423
GRAVY (calculated)
-0.471
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILSWWKGD KNETPKTTQK PDPKPQISSD KPEVPGMNGA VEVSRPNPPP TDITVFEFGS VAASVDKVTL AGYCPVSDEL EPCRWELMPA SGSDAPQFRV
101: VF
101: VF
1: MGILSWFTGS PKPSQSETSK PEMIQMPKSE TPAPGMNGAI EVPRPDRATV FEFGSVAATG DRVTLAGYCP VSDDLEPCRW EILPADGKDA PQFRVVF
Arabidopsis Description
Allyl alcohol dehydrogenase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ93]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.