Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0500450-00 | |
| Os05t0586300-00 | |
| Os06t0107000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33350.1 | Os05t0586300-00 | AT3G24140.1 | 21798944 |
| AT4G33350.1 | Os05t0500450-00 | AT3G59840.1 | 21798944 |
| AT4G33350.1 | Os06t0107000-01 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G076600.1 | Wheat | plastid | 91.38 | 19.7 |
| TraesCS7D01G172300.1 | Wheat | plastid | 91.38 | 19.56 |
| TraesCS7A01G171800.1 | Wheat | plastid | 91.38 | 19.49 |
| Zm00001d044931_P001 | Maize | plastid | 91.38 | 18.93 |
| EER89408 | Sorghum | plastid | 91.38 | 18.73 |
| GSMUA_Achr9P27070_001 | Banana | plastid | 43.1 | 18.38 |
| HORVU7Hr1G035680.1 | Barley | cytosol | 86.21 | 17.99 |
| GSMUA_Achr6P30510_001 | Banana | plastid | 77.59 | 15.36 |
| KRH61282 | Soybean | nucleus | 67.24 | 15.12 |
| KRH51981 | Soybean | plastid | 67.24 | 15.0 |
| VIT_18s0001g10590.t01 | Wine grape | plastid | 65.52 | 13.72 |
| PGSC0003DMT400020682 | Potato | plastid | 65.52 | 12.97 |
| CDX75346 | Canola | plastid | 58.62 | 12.69 |
| Solyc04g079000.2.1 | Tomato | plastid | 63.79 | 12.63 |
| AT4G33350.1 | Thale cress | plastid | 56.9 | 12.31 |
| Bra011434.1-P | Field mustard | plastid | 55.17 | 12.03 |
| CDX68969 | Canola | plastid | 51.72 | 9.09 |
| Os07t0290800-01 | Rice | plastid | 34.48 | 6.85 |
| KRG99384 | Soybean | plastid | 12.07 | 4.49 |
Protein Annotations
| EnsemblPlants:Os06t0213200-01 | EnsemblPlantsGene:Os06g0213200 | Gene3D:3.40.1350.100 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Tic22-like | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF2 | PFAM:PF04278 | ProteinID:BAF19041.1 | ProteinID:BAS96757.1 |
| UniParc:UPI0000E12702 | UniProt:Q0DDN2 | MapMan:23.1.3.6 | : | : | : |
Description
Similar to Tic22. (Os06t0213200-01)
Coordinates
chr6:-:5773657..5774238
Molecular Weight (calculated)
6388.7 Da
IEP (calculated)
9.276
GRAVY (calculated)
-0.536
Length
58 amino acids
Sequence
(BLAST)
(BLAST)
1: TKASKTSRGS ALSKQIMVGS LEDVLKKMEM NERNSGWDDL IFIPPGKSLN QHINEVSA
001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
Arabidopsis Description
TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.