Factsheet for Os05t0586300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0691500-01	nucleus
Os03t0123500-02
Os03t0135700-01	nucleus
Os03t0260600-01
Os03t0435800-00
Os03t0435900-01
Os03t0824000-01
Os04t0117200-01
Os08t0432800-01
Os08t0560900-01
Os09t0410700-00
Os11t0362633-00
Os11t0368172-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	Os04t0117200-01	AT1G19980.1	21798944
AT3G24140.1	Os03t0123500-02	AT1G62990.1	21798944
AT3G24140.1	Os03t0435800-00	AT1G73790.1	21798944
AT3G24140.1	Os03t0435900-01	AT1G73790.1	21798944
AT3G24140.1	Os03t0824000-01	AT1G73790.1	21798944
AT3G24140.1	Os11t0362633-00	AT1G73790.1	21798944
AT3G24140.1	Os11t0368172-01	AT1G73790.1	21798944
AT3G24140.1	Os03t0260600-01	AT3G25710.1	21798944
AT3G24140.1	Os08t0432800-01	AT3G25710.1	21798944
AT3G24140.1	Os09t0410700-00	AT3G25710.1	21798944
AT3G24140.1	Os08t0560900-01	AT4G02770.1	21798944
AT3G24140.1	Os02t0691500-01	AT5G46690.1	17088607
AT3G24140.1	Os02t0691500-01	AT5G46690.1	21798944
AT3G24140.1	Os03t0135700-01	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28400_001	Banana	nucleus	34.37	66.83
TraesCS1B01G300100.1	Wheat	nucleus	71.06	65.95
TraesCS1D01G289400.1	Wheat	nucleus	71.32	65.87
Zm00001d009715_P001	Maize	nucleus	71.06	65.79
TraesCS1A01G290800.1	Wheat	nucleus	70.54	65.0
GSMUA_Achr2P06030_001	Banana	nucleus	53.23	64.58
KXG22636	Sorghum	nucleus	75.19	63.68
HORVU1Hr1G071330.3	Barley	nucleus	70.54	62.61
Solyc09g091760.1.1	Tomato	nucleus	35.66	55.87
VIT_05s0029g00050.t01	Wine grape	nucleus	54.26	52.9
Solyc05g053660.1.1	Tomato	nucleus	49.61	50.13
PGSC0003DMT400040761	Potato	nucleus	49.61	49.23
PGSC0003DMT400076223	Potato	nucleus	35.14	47.72
KRH75571	Soybean	nucleus	52.45	47.32
Bra028357.1-P	Field mustard	nucleus	48.58	47.0
Bra001929.1-P	Field mustard	nucleus	49.1	46.91
CDX92996	Canola	nucleus	49.1	46.91
CDX94841	Canola	nucleus	48.84	46.32
KRH71094	Soybean	nucleus	52.97	45.96
AT3G24140.1	Thale cress	nucleus	49.1	45.89
CDX85167	Canola	nucleus	45.74	45.5
Bra028351.1-P	Field mustard	nucleus	41.34	44.44
CDX77460	Canola	nucleus	40.57	44.1
CDY18083	Canola	nucleus	41.34	41.67
CDY64587	Canola	nucleus	39.53	41.24
Os05t0597000-00	Rice	nucleus	23.26	39.65
Os02t0759000-01	Rice	cytosol	13.7	34.87
Os03t0188400-01	Rice	nucleus	28.42	33.43
Os10t0376900-01	Rice	nucleus	27.13	32.01
Os09t0468700-00	Rice	nucleus	27.65	30.48
Os08t0483900-01	Rice	nucleus	27.91	29.75
Os02t0691500-01	Rice	nucleus	27.13	28.15
Os03t0122100-00	Rice	mitochondrion, nucleus, plastid	20.67	25.72
Os06t0526100-01	Rice	cytosol, endoplasmic reticulum, nucleus	24.29	23.8
Os02t0257500-00	Rice	nucleus	24.55	22.89

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0P0WRG0	InterPro:ACT_dom	ProteinID:BAS95575.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009791	GO:GO:0009987	GO:GO:0010052	GO:GO:0010377	GO:GO:0010444
GO:GO:0016043	GO:GO:0019538	GO:GO:0030154	GO:GO:0045597	GO:GO:0045893	GO:GO:0046983
GO:GO:0051782	GO:GO:0061086	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlantsGene:Os05g0586300	EnsemblPlants:Os05t0586300-00	PFAM:PF00010	PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR11969
PANTHER:PTHR11969:SF46	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0003939CBB	InterPro:bHLH_dom	SEG:seg

Description

basic helix-loop-helix protein 051Similar to FMA (FAMA); DNA binding / transcription activator/ transcription factor. (Os05t0586300-00)

Coordinates

chr5:-:29208375..29210085

Molecular Weight (calculated)

41104.6 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.358

Length

387 amino acids

Sequence
(BLAST)

001: MVDYMLGQPP PTTPGPQSQV SFDKLTFSDV LQFADFGPKL ALNQPAASDN GGGGGDDGDD DDDSYFLRFQ SLPSLPAVPP PRGGAAAAHQ VVDEQEGSKQ
101: TVDAGGVSES TTLVQQADGG GGRAEKAGEQ GKSGRRKRPR TVKTSEEVES QRMTHIAVER NRRRQMNEYL RVLRSLMPGS YVQRGDQASI IGGAIEFIRE
201: LEQLIQCLES QKRRRLYGGD APAPPARPVA DGAVLPAPMQ QPPPATPPFF PPSIPFPASS GAGDGTGAGV AKVALDLDAS GGGEVGGGVR EEMAENKSCV
301: ADIEVRVVGV DAMIKILSRR RPGQLIKTVA ALEEMHMSIL HTNITTIDQT VLYSFNVKIA GDARFSAEDI AGAVHQILSF IDVNYTL

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.