Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0107500-00 | |
| Os07t0499800-01 | |
| Os08t0204800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | Os03t0107500-00 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | Os07t0499800-01 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | Os08t0204800-01 | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G013500.2 | Wheat | nucleus | 43.96 | 47.4 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 43.48 | 47.24 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 43.24 | 46.74 |
| Zm00001d039489_P002 | Maize | nucleus | 37.44 | 41.67 |
| EES02317 | Sorghum | cytosol | 39.61 | 40.9 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 41.06 | 39.17 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 16.43 | 35.6 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 15.94 | 35.48 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 32.13 | 32.05 |
| Bra016482.1-P | Field mustard | nucleus | 21.01 | 26.36 |
| CDY62942 | Canola | nucleus | 20.77 | 26.06 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 33.33 | 25.7 |
| CDY57605 | Canola | nucleus | 13.04 | 24.66 |
| Solyc04g081450.2.1 | Tomato | nucleus | 21.26 | 24.51 |
| PGSC0003DMT400025536 | Potato | nucleus | 21.26 | 24.51 |
| AT1G19980.1 | Thale cress | nucleus | 19.81 | 23.98 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 21.74 | 23.75 |
| KRH11849 | Soybean | nucleus | 21.5 | 23.24 |
| CDX83731 | Canola | nucleus | 19.08 | 22.57 |
| CDY43422 | Canola | nucleus | 17.63 | 22.46 |
| Bra012201.1-P | Field mustard | nucleus | 17.87 | 22.22 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 30.43 | 21.8 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 23.19 | 21.57 |
| KRH36857 | Soybean | nucleus | 19.81 | 21.41 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 17.15 | 18.98 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 23.19 | 16.78 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 28.02 | 16.67 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 23.19 | 16.22 |
Protein Annotations
| EnsemblPlants:Os04t0117200-01 | EnsemblPlantsGene:Os04g0117200 | EntrezGene:4334953 | ncoils:Coil | PANTHER:PTHR35992 | ProteinID:BAF13965.1 |
| ProteinID:BAS87619.1 | ProteinID:CAE01720.2 | RefSeq:XP_015634040.1 | SEG:seg | UniParc:UPI000021C718 | UniProt:Q7XT12 |
| MapMan:35.2 | : | : | : | : | : |
Description
Spectrin repeat containing protein. (Os04t0117200-01)
Coordinates
chr4:-:1015435..1019694
Molecular Weight (calculated)
46648.6 Da
IEP (calculated)
10.326
GRAVY (calculated)
-0.915
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGGRGR GARVAAPAGD SGKGAQAEWL RIYDGIVAML RKTQAQVEEL VAERDHLAAF VKIQHDFMVS RVGRLQSSLQ QARKADAIRK RYEAANMEIL
101: IGDKEREARS YQKIAELTEN DLEDFRTSIA ALAAENYELK EKLKEVERHA ELAENTVDHH IHSPRDLRAE LKKLKHAYKT LSSEKEKEVS ALRAENDFVW
201: NQLRTMENDY TDLLKKKKIE AAQATEAAQK LQKNLEELQD QNKGNEIGRL QAEAVDAKMN ISILEDKLQE MLSLVKEKDL EIEQLKHGQP MTSQINKKDI
301: NQKNRKCRSQ DPPSRDKSTN LQATPPGRKV KISRQHASSS KQKQVQSRNN SRRQKLEGDK SEVGEKRKRA LPSSSGLQRC SARQQAKSSA SPVVQPLLFS
401: PIFRVPKVKT PTPP
101: IGDKEREARS YQKIAELTEN DLEDFRTSIA ALAAENYELK EKLKEVERHA ELAENTVDHH IHSPRDLRAE LKKLKHAYKT LSSEKEKEVS ALRAENDFVW
201: NQLRTMENDY TDLLKKKKIE AAQATEAAQK LQKNLEELQD QNKGNEIGRL QAEAVDAKMN ISILEDKLQE MLSLVKEKDL EIEQLKHGQP MTSQINKKDI
301: NQKNRKCRSQ DPPSRDKSTN LQATPPGRKV KISRQHASSS KQKQVQSRNN SRRQKLEGDK SEVGEKRKRA LPSSSGLQRC SARQQAKSSA SPVVQPLLFS
401: PIFRVPKVKT PTPP
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.