Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d006417_P002 | |
| Zm00001d021532_P001 | |
| Zm00001d024292_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | Zm00001d006417_P002 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | Zm00001d021532_P001 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | Zm00001d024292_P002 | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0117200-01 | Rice | cytosol | 41.67 | 37.44 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 49.46 | 34.26 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 32.8 | 31.77 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 32.53 | 31.76 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 32.53 | 31.59 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 32.26 | 27.65 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 26.61 | 23.86 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 10.75 | 21.51 |
| CDY57605 | Canola | nucleus | 12.37 | 21.0 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 20.97 | 20.58 |
| Solyc04g081450.2.1 | Tomato | nucleus | 19.62 | 20.33 |
| Bra016482.1-P | Field mustard | nucleus | 18.01 | 20.3 |
| CDY62942 | Canola | nucleus | 18.01 | 20.3 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 10.22 | 19.9 |
| AT1G19980.1 | Thale cress | nucleus | 18.01 | 19.59 |
| PGSC0003DMT400025536 | Potato | nucleus | 18.01 | 18.66 |
| KRH36857 | Soybean | nucleus | 18.82 | 18.28 |
| KRH11849 | Soybean | nucleus | 18.55 | 18.02 |
| CDY43422 | Canola | nucleus | 15.05 | 17.23 |
| CDX83731 | Canola | nucleus | 16.13 | 17.14 |
| Bra012201.1-P | Field mustard | nucleus | 15.32 | 17.12 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 15.05 | 14.97 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 21.51 | 13.84 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 16.13 | 13.48 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 18.28 | 11.89 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 18.28 | 11.49 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 20.7 | 11.06 |
Protein Annotations
| EnsemblPlants:Zm00001d039489_P002 | EnsemblPlants:Zm00001d039489_T002 | EnsemblPlantsGene:Zm00001d039489 | ncoils:Coil | PANTHER:PTHR35992 | ProteinID:ONM28957.1 |
| SEG:seg | UniParc:UPI0008454FAA | UniProt:A0A1D6MHP5 | MapMan:35.2 | : | : |
Description
cytomatrix protein-related
Coordinates
chr3:-:5710002..5715291
Molecular Weight (calculated)
42455.5 Da
IEP (calculated)
9.408
GRAVY (calculated)
-0.917
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDDDGAPA PGVPGQVYLP AWRRAYDRLV KMLRQAYAQA EELSVEREHL ISELQFLQSA SRERQEISQV RLQQIHCHQK LAELAESDLE NFKSCISNLA
101: AENTELKEKL KMVESQVQIS TDNSDHEKSG KYTKEELQKL KKAYKTMRSE KDKEISALQA EKNFVWNQLK NMEKDYTGTI KSKHIEVKQA TEAAQKLLQN
201: VDELQAAAQK KDGEIDKLQI EVSNAKQRIS ILEDELQNLR SLVKDKDHKT GKNEDGEPET RRMLKKDANK ANRKSKSEWL PLEDISRTSQ VTPDRREVKT
301: TRALASETNQ KRKRSSFKSS MSCGNQRCYT RLLQVKAAVS PVLLPPSFTV PRLKTPPPPQ SDEITSSCSL MC
101: AENTELKEKL KMVESQVQIS TDNSDHEKSG KYTKEELQKL KKAYKTMRSE KDKEISALQA EKNFVWNQLK NMEKDYTGTI KSKHIEVKQA TEAAQKLLQN
201: VDELQAAAQK KDGEIDKLQI EVSNAKQRIS ILEDELQNLR SLVKDKDHKT GKNEDGEPET RRMLKKDANK ANRKSKSEWL PLEDISRTSQ VTPDRREVKT
301: TRALASETNQ KRKRSSFKSS MSCGNQRCYT RLLQVKAAVS PVLLPPSFTV PRLKTPPPPQ SDEITSSCSL MC
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.