Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g00340.t01 | |
| VIT_12s0059g01290.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | VIT_01s0010g00340.t01 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | VIT_12s0059g01290.t01 | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012201.1-P | Field mustard | nucleus | 39.58 | 45.05 |
| AT1G19980.1 | Thale cress | nucleus | 40.37 | 44.74 |
| Solyc04g081450.2.1 | Tomato | nucleus | 42.22 | 44.57 |
| CDY43422 | Canola | nucleus | 37.47 | 43.69 |
| PGSC0003DMT400025536 | Potato | nucleus | 41.16 | 43.45 |
| Bra016482.1-P | Field mustard | nucleus | 37.73 | 43.33 |
| CDY57605 | Canola | nucleus | 24.54 | 42.47 |
| CDY62942 | Canola | nucleus | 36.94 | 42.42 |
| KRH36857 | Soybean | nucleus | 42.48 | 42.04 |
| KRH11849 | Soybean | nucleus | 40.9 | 40.47 |
| CDX83731 | Canola | nucleus | 33.51 | 36.29 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 32.45 | 29.64 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 26.91 | 26.56 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 26.39 | 26.25 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 26.12 | 25.85 |
| Os04t0117200-01 | Rice | cytosol | 23.75 | 21.74 |
| Zm00001d039489_P002 | Maize | nucleus | 20.58 | 20.97 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 22.69 | 19.82 |
| EES02317 | Sorghum | cytosol | 20.84 | 19.7 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 8.97 | 17.8 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 8.18 | 16.67 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.72 | 13.9 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 15.83 | 11.17 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 12.93 | 11.01 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 18.73 | 10.2 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 15.57 | 9.97 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 14.78 | 9.79 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 14.78 | 9.69 |
Protein Annotations
| ArrayExpress:VIT_18s0001g14300 | EMBL:FN595227 | EnsemblPlants:VIT_18s0001g14300.t01 | EnsemblPlantsGene:VIT_18s0001g14300 | EntrezGene:100259217 | EntrezGene:LOC100259217 |
| ncoils:Coil | PANTHER:PTHR35992 | ProteinID:CBI19864 | ProteinID:CBI19864.3 | RefSeq:XP_002279957 | RefSeq:XP_002279957.2 |
| SEG:seg | UniParc:UPI0001BE1CB6 | UniProt:E0CQ59 | wikigene:100259217 | wikigene:LOC100259217 | MapMan:35.2 |
Description
No Description!
Coordinates
chr18:+:12299065..12301674
Molecular Weight (calculated)
43715.2 Da
IEP (calculated)
9.791
GRAVY (calculated)
-0.946
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIDKDSHVS SDRQKWQKIF NALVHMLQTQ QTQVESLAKE RKLLEDRIKF QYDRWISDVH SLQDQIAQME MKFTVQEKER LVEAAKSDLL MGLKKREVSL
101: CKLKLESTDD ELVDFKVLID FLSHECLDPN GISKVGDKEK GSRGDNNLKS VKTTKEEEQC AKRLEGEVRK LKWEYENLAS RNSAEVSALL AEQNFVWNQY
201: KIMESNYSNK LNSKHVEVEQ ANEKIDNLLV GMEQLESLNN EKDDKIVKLK TDLAKMETET KKKNEEISRL SKEVELLRKS RSASVTPILN RCTEKQKTSG
301: QGKNKSWIGR NISIKKETPA SEKNTEKKKE SSVSEKNTEK KSRGSKRKEI NVTPTSETPR LFTSTFKIPK LKNSSPQIM
101: CKLKLESTDD ELVDFKVLID FLSHECLDPN GISKVGDKEK GSRGDNNLKS VKTTKEEEQC AKRLEGEVRK LKWEYENLAS RNSAEVSALL AEQNFVWNQY
201: KIMESNYSNK LNSKHVEVEQ ANEKIDNLLV GMEQLESLNN EKDDKIVKLK TDLAKMETET KKKNEEISRL SKEVELLRKS RSASVTPILN RCTEKQKTSG
301: QGKNKSWIGR NISIKKETPA SEKNTEKKKE SSVSEKNTEK KSRGSKRKEI NVTPTSETPR LFTSTFKIPK LKNSSPQIM
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.