Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G067600.1 | Wheat | nucleus | 62.83 | 41.08 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 13.64 | 26.7 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 20.86 | 20.47 |
| Os04t0117200-01 | Rice | cytosol | 18.98 | 17.15 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 25.67 | 16.22 |
| Zm00001d039489_P002 | Maize | nucleus | 14.97 | 15.05 |
| AT1G19980.1 | Thale cress | nucleus | 13.64 | 14.91 |
| EES02317 | Sorghum | cytosol | 14.97 | 13.97 |
| Bra016482.1-P | Field mustard | nucleus | 12.3 | 13.94 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 15.24 | 13.73 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 13.9 | 13.72 |
| CDY57605 | Canola | nucleus | 8.02 | 13.7 |
| PGSC0003DMT400025536 | Potato | nucleus | 13.1 | 13.65 |
| CDY43422 | Canola | nucleus | 11.76 | 13.54 |
| KRH36857 | Soybean | nucleus | 13.64 | 13.32 |
| Solyc04g081450.2.1 | Tomato | nucleus | 12.57 | 13.09 |
| CDY62942 | Canola | nucleus | 11.5 | 13.03 |
| KRH11849 | Soybean | nucleus | 13.1 | 12.79 |
| Bra012201.1-P | Field mustard | nucleus | 11.23 | 12.61 |
| CDX83731 | Canola | nucleus | 11.23 | 12.0 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 15.24 | 10.61 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G051100.1 | EnsemblPlantsGene:TraesCS6A01G051100 | ncoils:Coil | PANTHER:PTHR35992 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr6A:-:26631458..26634960
Molecular Weight (calculated)
41378.9 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.889
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKPTTEALF FYGPELNGSC GPSSSPSLMA DGDGDGDGGG GEGGGSAEWQ PIYDRVQAQA EALAADRARL EAASKVQRES WEAARRLQRS VEELQAAARE
101: KDAEIERLRA EAADASKKLQ EVRQADADRR MRWEAAYVDL ILGANQKLAE LRDVDMEDSR TCAETPNSKA RLSQNTVDQA CVASDLSTEL RKLKRAYETL
201: SSQKDMEVST LLSEKERARN QLVVMRKAYG VLLRNKNGEA AQTTEAAQKL QRGVDDLKVS AQKKDDEISR LRAEAVAAEK KLQIAQKLQQ SVDDLKAAAQ
301: KKDDEIDRLR AEVVAAEKKL REMQSLVMEK DDEIQTINDG QDEANQKRRR VSSTSNDDEQ SESVEDDDVQ NGSD
101: KDAEIERLRA EAADASKKLQ EVRQADADRR MRWEAAYVDL ILGANQKLAE LRDVDMEDSR TCAETPNSKA RLSQNTVDQA CVASDLSTEL RKLKRAYETL
201: SSQKDMEVST LLSEKERARN QLVVMRKAYG VLLRNKNGEA AQTTEAAQKL QRGVDDLKVS AQKKDDEISR LRAEAVAAEK KLQIAQKLQQ SVDDLKAAAQ
301: KKDDEIDRLR AEVVAAEKKL REMQSLVMEK DDEIQTINDG QDEANQKRRR VSSTSNDDEQ SESVEDDDVQ NGSD
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.