Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G013500.2 | Wheat | nucleus | 95.8 | 95.05 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 93.96 | 93.47 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 64.57 | 56.68 |
| Os04t0117200-01 | Rice | cytosol | 47.24 | 43.48 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 17.06 | 34.03 |
| EES02317 | Sorghum | cytosol | 35.7 | 33.92 |
| Zm00001d039489_P002 | Maize | nucleus | 31.76 | 32.53 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 31.23 | 28.67 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 26.25 | 26.39 |
| Solyc04g081450.2.1 | Tomato | nucleus | 23.88 | 25.35 |
| CDY57605 | Canola | nucleus | 14.44 | 25.11 |
| Bra016482.1-P | Field mustard | nucleus | 21.26 | 24.55 |
| PGSC0003DMT400025536 | Potato | nucleus | 23.1 | 24.51 |
| CDY62942 | Canola | nucleus | 21.0 | 24.24 |
| AT1G19980.1 | Thale cress | nucleus | 21.0 | 23.39 |
| CDY43422 | Canola | nucleus | 19.16 | 22.46 |
| Bra012201.1-P | Field mustard | nucleus | 19.42 | 22.22 |
| KRH11849 | Soybean | nucleus | 22.05 | 21.93 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 30.45 | 21.6 |
| KRH36857 | Soybean | nucleus | 21.52 | 21.41 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 20.47 | 20.86 |
| CDX83731 | Canola | nucleus | 18.37 | 20.0 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 23.62 | 15.2 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G007200.1 | EnsemblPlantsGene:TraesCS2A01G007200 | ncoils:Coil | PANTHER:PTHR35992 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2A:+:3106394..3110967
Molecular Weight (calculated)
43376.5 Da
IEP (calculated)
9.294
GRAVY (calculated)
-0.916
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGASPAR EGGREEWLRI YDRMVAVLRK SHRDVEALLA DRTRLEAVLK IQHDFWLHRD AVLRDRLDET RRVEDCLRRG DAAKLDLLLG DKDLEVRRHR
101: IYIEHQDGDL EDFKRDAAAL AQENNELKIK LKEAESCAEL SEPTTDPEHS GRDLRAEIRK LKKAYKALSS QKESEVSALL AEKDFVWNQY KTMEKDYETL
201: LKKKKMEAAQ ATEAAEKLQQ KVEELQLQVV AQKKDDDVGR LQAEANDAKK KVLALEDKLQ KMHSLVSEKD DEIQKLKSGH LQSSQKRKKD ISGTHRRSRS
301: EGPSVRGKSK GNPRRQMAEE DQPETSQKRQ CASSLSSGLA LRRCSSRMTH LRPASSSSPA PQQVLFHSSF KLLLDLHDGC V
101: IYIEHQDGDL EDFKRDAAAL AQENNELKIK LKEAESCAEL SEPTTDPEHS GRDLRAEIRK LKKAYKALSS QKESEVSALL AEKDFVWNQY KTMEKDYETL
201: LKKKKMEAAQ ATEAAEKLQQ KVEELQLQVV AQKKDDDVGR LQAEANDAKK KVLALEDKLQ KMHSLVSEKD DEIQKLKSGH LQSSQKRKKD ISGTHRRSRS
301: EGPSVRGKSK GNPRRQMAEE DQPETSQKRQ CASSLSSGLA LRRCSSRMTH LRPASSSSPA PQQVLFHSSF KLLLDLHDGC V
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.