Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G013500.2 | Wheat | nucleus | 95.56 | 95.31 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 93.47 | 93.96 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 65.54 | 57.83 |
| Os04t0117200-01 | Rice | cytosol | 46.74 | 43.24 |
| EES02317 | Sorghum | cytosol | 34.73 | 33.17 |
| Zm00001d039489_P002 | Maize | nucleus | 31.59 | 32.53 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 30.29 | 27.95 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 25.85 | 26.12 |
| Bra016482.1-P | Field mustard | nucleus | 22.19 | 25.76 |
| CDY62942 | Canola | nucleus | 21.93 | 25.45 |
| Solyc04g081450.2.1 | Tomato | nucleus | 23.76 | 25.35 |
| PGSC0003DMT400025536 | Potato | nucleus | 23.5 | 25.07 |
| CDY57605 | Canola | nucleus | 14.1 | 24.66 |
| AT1G19980.1 | Thale cress | nucleus | 21.15 | 23.68 |
| CDY43422 | Canola | nucleus | 19.32 | 22.77 |
| Bra012201.1-P | Field mustard | nucleus | 19.58 | 22.52 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 30.81 | 21.97 |
| KRH11849 | Soybean | nucleus | 21.67 | 21.67 |
| KRH36857 | Soybean | nucleus | 20.89 | 20.89 |
| CDX83731 | Canola | nucleus | 19.06 | 20.86 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 23.5 | 20.22 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 28.98 | 15.95 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G008300.2 | EnsemblPlantsGene:TraesCS2D01G008300 | ncoils:Coil | PANTHER:PTHR35992 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2D:-:4461510..4465681
Molecular Weight (calculated)
43437.7 Da
IEP (calculated)
9.572
GRAVY (calculated)
-0.883
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGASPA REGGREEWLR VYDRMVAVLR KSHRDVEALL ADRTRLEAVL KIQHDFWLHR DAVLRDRLDE TRRVEDCLRR GDAAKLDLLL GDKDLEVRRH
101: RIYIEHQDGD LEDFKRDAAA LAEENNALKI KLKEAESCAE LSEPTTDPEH SGRDLRAEIR KLKKAYKALS SQKESEVSAL LAEKDFVWNQ YKTMEKDYET
201: LLKKKKMEAA QATEAAEKLQ QKVEELQLQV VAQKKDDDVG RLQAEANDAK KKMLVLEDKL QKMHSLVSEK DDEIQKLKSG HLQASQKRKK DISGTHRRSR
301: SEGPSVRGKS KGIPRRQMAE EDQPETSQKR QCASSLSSGL ALRRCSSRMT HLKPASSSSS PAPQQVLFHS SFKLLLDLRD GGV
101: RIYIEHQDGD LEDFKRDAAA LAEENNALKI KLKEAESCAE LSEPTTDPEH SGRDLRAEIR KLKKAYKALS SQKESEVSAL LAEKDFVWNQ YKTMEKDYET
201: LLKKKKMEAA QATEAAEKLQ QKVEELQLQV VAQKKDDDVG RLQAEANDAK KKMLVLEDKL QKMHSLVSEK DDEIQKLKSG HLQASQKRKK DISGTHRRSR
301: SEGPSVRGKS KGIPRRQMAE EDQPETSQKR QCASSLSSGL ALRRCSSRMT HLKPASSSSS PAPQQVLFHS SFKLLLDLRD GGV
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.