Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 18.82 | 70.43 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 57.18 | 67.23 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 39.8 | 62.25 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 15.95 | 28.98 |
| Os04t0117200-01 | Rice | cytosol | 16.67 | 28.02 |
| Zm00001d039489_P002 | Maize | nucleus | 11.06 | 20.7 |
| EES02317 | Sorghum | cytosol | 11.49 | 19.95 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 11.35 | 19.04 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 10.2 | 18.73 |
| PGSC0003DMT400025536 | Potato | nucleus | 9.48 | 18.38 |
| Solyc04g081450.2.1 | Tomato | nucleus | 9.34 | 18.11 |
| Bra016482.1-P | Field mustard | nucleus | 8.19 | 17.27 |
| AT1G19980.1 | Thale cress | nucleus | 8.48 | 17.25 |
| Bra012201.1-P | Field mustard | nucleus | 8.19 | 17.12 |
| CDY62942 | Canola | nucleus | 8.05 | 16.97 |
| CDY43422 | Canola | nucleus | 7.9 | 16.92 |
| KRH36857 | Soybean | nucleus | 9.2 | 16.71 |
| KRH11849 | Soybean | nucleus | 9.05 | 16.45 |
| CDX83731 | Canola | nucleus | 8.05 | 16.0 |
| CDY57605 | Canola | nucleus | 4.74 | 15.07 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 11.06 | 14.34 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G380700.1 | EnsemblPlantsGene:TraesCS1D01G380700 | ncoils:Coil | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1D:+:456060150..456064404
Molecular Weight (calculated)
76013.8 Da
IEP (calculated)
5.107
GRAVY (calculated)
-0.676
Length
696 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCGCGGGVA AGDGGLAEWQ RIYDRVEALA AGRARLEARN RTQHEFWDAR DKINQSRLHQ AELSRSRWEA ACRELLPSDD PKLAELLESD LEDSRTCEAL
101: LDTENSELLA QLKEDGNCVE LNENTADHEH TSGDLISELR KLKRTYETIC WNKDKEATEA VQKLQQKIEE LQVAACKKDD EIGILQAEAS ACINKLVVLK
201: GKLDEMRSLD KDIDIQKLKV GQHETLERKI ASLPNIQSKE AGNVVGIIQK NADHGAITGE LRAELRKLKQ AYETLSSNKD KEISKLLEMK DFLLNQLMRM
301: DKDNAELLQK KEVEAAQANE AAQKLQQNVE ELEVSVRYKD DEIGRLRAEA GPLKIKEVEA AQANEAAQKL QQNVEELQGI VRYKDDEIGR LRAEAGPLKI
401: KEVEAEAKKA VQTLQQNVEE LQVAVRNKDD EIGKLRAEVG HLKIKQVEAA QKLQQNVDVL QIEVRNKNDE NCRLPAEAAN AEKKVPALEV THSTEPKTAE
501: ASASTKALAV VVAASASPPG ASSKPGAGIN IDLTPPRLVD DREASPPFPP GFGPPARFKD TTTTAPTATF AVVVAKGDGN PDQSIAGTTD AAGGLDIDNA
601: PLPPASTTTK TKSSMLKGKP RPKVQSNADK EGAELDSILG KRMERNRPES NVGLGENKEM NRDMYKKMRG SVSGEAESNI GVLGRKEATG IGATGN
101: LDTENSELLA QLKEDGNCVE LNENTADHEH TSGDLISELR KLKRTYETIC WNKDKEATEA VQKLQQKIEE LQVAACKKDD EIGILQAEAS ACINKLVVLK
201: GKLDEMRSLD KDIDIQKLKV GQHETLERKI ASLPNIQSKE AGNVVGIIQK NADHGAITGE LRAELRKLKQ AYETLSSNKD KEISKLLEMK DFLLNQLMRM
301: DKDNAELLQK KEVEAAQANE AAQKLQQNVE ELEVSVRYKD DEIGRLRAEA GPLKIKEVEA AQANEAAQKL QQNVEELQGI VRYKDDEIGR LRAEAGPLKI
401: KEVEAEAKKA VQTLQQNVEE LQVAVRNKDD EIGKLRAEVG HLKIKQVEAA QKLQQNVDVL QIEVRNKNDE NCRLPAEAAN AEKKVPALEV THSTEPKTAE
501: ASASTKALAV VVAASASPPG ASSKPGAGIN IDLTPPRLVD DREASPPFPP GFGPPARFKD TTTTAPTATF AVVVAKGDGN PDQSIAGTTD AAGGLDIDNA
601: PLPPASTTTK TKSSMLKGKP RPKVQSNADK EGAELDSILG KRMERNRPES NVGLGENKEM NRDMYKKMRG SVSGEAESNI GVLGRKEATG IGATGN
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.