Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | KRH12155 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | KRH37161 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | KRG91378 | AT2G32980.1 | 21798944 |
| AT1G19980.1 | KRH35436 | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36857 | Soybean | nucleus | 83.03 | 83.03 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 40.47 | 40.9 |
| Bra016482.1-P | Field mustard | nucleus | 33.42 | 38.79 |
| AT1G19980.1 | Thale cress | nucleus | 33.16 | 37.13 |
| CDY62942 | Canola | nucleus | 31.85 | 36.97 |
| PGSC0003DMT400025536 | Potato | nucleus | 33.68 | 35.93 |
| Bra012201.1-P | Field mustard | nucleus | 31.07 | 35.74 |
| Solyc04g081450.2.1 | Tomato | nucleus | 33.42 | 35.65 |
| CDY43422 | Canola | nucleus | 29.24 | 34.46 |
| CDX83731 | Canola | nucleus | 30.81 | 33.71 |
| CDY57605 | Canola | nucleus | 19.06 | 33.33 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 29.24 | 26.99 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 22.45 | 22.4 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 21.93 | 22.05 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 21.67 | 21.67 |
| Os04t0117200-01 | Rice | cytosol | 23.24 | 21.5 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 9.14 | 18.82 |
| Zm00001d039489_P002 | Maize | nucleus | 18.02 | 18.55 |
| EES02317 | Sorghum | cytosol | 18.54 | 17.71 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 8.09 | 16.23 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 18.28 | 16.13 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 12.79 | 13.1 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 16.45 | 11.73 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 13.32 | 11.46 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 14.1 | 9.44 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 14.36 | 9.29 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 16.45 | 9.05 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 13.58 | 9.0 |
Protein Annotations
| EMBL:ACUP02009243 | EnsemblPlants:KRH11849 | EnsemblPlantsGene:GLYMA_15G134600 | EntrezGene:100802663 | ncoils:Coil | PANTHER:PTHR35992 |
| ProteinID:KRH11849 | ProteinID:KRH11849.1 | UniParc:UPI000233AEDC | UniProt:I1MG83 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr15:-:10820180..10822921
Molecular Weight (calculated)
43895.1 Da
IEP (calculated)
10.190
GRAVY (calculated)
-0.986
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSRKAEPS NDVVSSERRN WSNIFKSLVQ MVRSQQNQLH SFASRHKFLE DRLRMQHEGW VSDVRCHKDQ ISQMNGMLTS EEKKRSLEVA KADFALGLKH
101: REAAMLKWIL EHTEDELADF KAWFEILSRK SSNGEDQGTS SKDTDLKKKG STNRGNKPTR NNTAEKEKYS SEIKDEFSRL KGEYDKLALE KYSEVTALLA
201: EKKFVWNQYN IMENDYADKL RTKEAEVEKA NEKIKVLVSS MEQLQSEKYE KDSKISELQS KMAEMEAETK RLNKEISGLS VELESLRKFR NNQVTPPVLN
301: HCTQGTKAPE SGVVKSNRSR RNMTSKKEIC TPNAPVPAKS SETGTKTKSM KRKEAPVIPT SDTPKLFSSS FKVPKLKSSV RVT
101: REAAMLKWIL EHTEDELADF KAWFEILSRK SSNGEDQGTS SKDTDLKKKG STNRGNKPTR NNTAEKEKYS SEIKDEFSRL KGEYDKLALE KYSEVTALLA
201: EKKFVWNQYN IMENDYADKL RTKEAEVEKA NEKIKVLVSS MEQLQSEKYE KDSKISELQS KMAEMEAETK RLNKEISGLS VELESLRKFR NNQVTPPVLN
301: HCTQGTKAPE SGVVKSNRSR RNMTSKKEIC TPNAPVPAKS SETGTKTKSM KRKEAPVIPT SDTPKLFSSS FKVPKLKSSV RVT
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.