CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92639
KRG93968
KRG96225
KRG97837
KRH00424
KRH01744
KRH07089
KRH07729
KRH12348
KRH22822
KRH25284
KRH25929
KRH30104
KRH30384
KRH31032
KRH34143
KRH37351
KRH40763
KRH42233
KRH43389
KRH44630
KRH46935
KRH47287
KRH53856
KRH58237
KRH58350
KRH59535
KRH62794
KRH64098
KRH67971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30860.1	KRG92639	AT1G09770.1	21798944
AT1G30860.1	KRH34143	AT1G09770.1	21798944
AT1G30860.1	KRH07729	AT1G61590.1	21798944
AT1G30860.1	KRH12348	AT2G01250.1	21798944
AT1G30860.1	KRH25929	AT2G01250.1	21798944
AT1G30860.1	KRH37351	AT2G01250.1	21798944
AT1G30860.1	KRH44630	AT2G01250.1	21798944
AT1G30860.1	KRH47287	AT2G01250.1	21798944
AT1G30860.1	KRH00424	AT2G38490.1	21798944
AT1G30860.1	KRH40763	AT2G38490.1	21798944
AT1G30860.1	KRG97837	AT2G39760.1	21798944
AT1G30860.1	KRH31032	AT2G39760.1	21798944
AT1G30860.1	KRH01744	AT2G43370.1	21798944
AT1G30860.1	KRH46935	AT2G43370.1	21798944
AT1G30860.1	KRG93968	AT3G01690.1	21798944
AT1G30860.1	KRH07089	AT3G01690.1	21798944
AT1G30860.1	KRH58237	AT3G01690.1	21798944
AT1G30860.1	KRG96225	AT3G11590.1	21798944
AT1G30860.1	KRH67971	AT3G11590.1	21798944
AT1G30860.1	KRH42233	AT3G60360.1	21798944
AT1G30860.1	KRH58350	AT3G60360.1	21798944
AT1G30860.1	KRH30104	AT4G28230.1	21798944
AT1G30860.1	KRH62794	AT4G28230.1	21798944
AT1G30860.1	KRH43389	AT5G09810.1	21798944
AT1G30860.1	KRH53856	AT5G09810.1	21798944
AT1G30860.1	KRH59535	AT5G09810.1	21798944
AT1G30860.1	KRH64098	AT5G09810.1	21798944
AT1G30860.1	KRH25284	AT5G22310.1	21798944
AT1G30860.1	KRH30384	AT5G22310.1	21798944
AT1G30860.1	KRH22822	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37161	Soybean	nucleus	56.49	56.18
VIT_01s0010g00340.t01	Wine grape	nucleus	24.1	30.32
CDY12454	Canola	nucleus	19.74	28.06
Bra005381.1-P	Field mustard	nucleus	19.74	27.93
CDY52188	Canola	nucleus	20.83	27.88
CDY02344	Canola	cytosol	20.83	27.76
Bra039871.1-P	Field mustard	nucleus	21.16	27.64
AT2G34920.2	Thale cress	nucleus	19.85	27.33
CDY31650	Canola	nucleus, plastid	18.87	26.86
Bra023148.1-P	Field mustard	nucleus	20.28	26.38
CDY09519	Canola	nucleus	20.39	26.08
GSMUA_Achr4P33210_001	Banana	nucleus	14.83	25.05
CDX84276	Canola	endoplasmic reticulum, extracellular	18.43	24.96
AT1G30860.1	Thale cress	cytosol	19.08	23.97
Bra021939.1-P	Field mustard	nucleus, plastid	16.14	23.76
GSMUA_Achr7P00390_001	Banana	nucleus	17.88	22.56
TraesCS2A01G229600.2	Wheat	nucleus, plastid	16.79	20.84
Solyc10g005220.2.1	Tomato	nucleus, plastid	21.16	20.59
HORVU2Hr1G048520.1	Barley	plastid	14.39	20.53
Zm00001d006417_P002	Maize	plastid	12.98	20.27
EER99396	Sorghum	plastid	17.01	20.21
PGSC0003DMT400029374	Potato	nucleus, plastid	21.7	20.18
PGSC0003DMT400035458	Potato	nucleus	22.68	20.1
CDX96975	Canola	cytosol	14.94	19.94
TraesCS2D01G233500.1	Wheat	cytosol, plastid	16.25	19.68
Zm00001d021532_P001	Maize	cytosol, plastid	16.47	19.53
TraesCS2B01G251300.1	Wheat	nucleus, plastid	15.59	19.48
Solyc02g082100.2.1	Tomato	vacuole	21.92	18.65
AT5G44690.1	Thale cress	nucleus	13.41	18.58
Os07t0499800-01	Rice	nucleus	14.83	18.09
CDY50063	Canola	cytosol	20.17	16.83
AT4G20160.2	Thale cress	cytosol	21.59	16.32
CDX78978	Canola	cytosol	20.07	16.25
CDY14941	Canola	nucleus	10.36	15.3
Bra013447.1-P	Field mustard	nucleus	19.96	14.81
KRG92104	Soybean	nucleus	9.49	10.26
KRH34682	Soybean	nucleus	9.49	10.25
KRH26545	Soybean	nucleus	7.31	8.42
KRH30548	Soybean	nucleus	7.74	8.26
KRH22786	Soybean	nucleus	7.42	8.01
KRH25125	Soybean	nucleus	7.09	7.61
Os03t0107500-00	Rice	plasma membrane	1.64	4.11
KRH66429	Soybean	nucleus	0.76	3.29

Protein Annotations

EntrezGene:100796627	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02009270	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G155500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7MBJ5	EnsemblPlants:KRH12155	ProteinID:KRH12155	ProteinID:KRH12155.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF103	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233B326
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:12985107..12990529

Molecular Weight (calculated)

103873.0 Da

IEP (calculated)

4.773

GRAVY (calculated)

-1.126

Length

917 amino acids

Sequence
(BLAST)

001: MASSQVEIAS SSPFGCVLRD RNHREACSRE SSNVKGTHHH ATFQRNMKNF VMDLNTCMVV SSDSTTNENE NNSSSSNNNQ RKAPKNSHLE RLRITPANPF
101: INNNNINNNE TSLASLISPR HSRLLDRWAT RQGCQMVSNL ENEAELLSMD DNDMLPRTSS SSEEEDSSSE TQNLGGASSL VQIWEKRLNQ SGVSKPNTPR
201: ERIGSTSSSI NENANAFSSE NANALTGEEQ CFDGPSGNEE SLFPDWESSD HSLSPSGRSE RDRVRVADII KKLTATNPNQ SPTPSFADDN EHEGYGSSVT
301: GSPCRERECG NQQQQQQHSE QNQRVNCSLR IRGRRAYNDL LAQMKNDRHG ELNNLVERGA VSKFPQRGRI QALLRLKLLQ RGTAANDSTR QKSTASEVNN
401: RQPQGSAIMQ LRERFSSGAE LRTAVQAEVA NPKSPQRGTA NKTTQLDNSA TTDHLSKDTS NNKGHGNANH ATESTQKSAS QTRIDHNTEE AHPSSDVKVQ
501: ETRPSSDVMT PHNDSQETTE ASSSTIGSNL NEIMADRAET SNQQNAMAKS SNDETLDEEV ESYQKYAETS YEEKVEEASN HNYGDEMEEE VEEIEQNCYE
601: TNYDWISEIS RPRSYWEERR QAWYREMLET GSQNEDIRRL LERRTVSSFL SSDFRDRMDR LMESHRGTQT HLVSSQEREE DSHGLMAFLQ ARLHSTIASQ
701: DGRDAREEEE EESRNQNEEE EEEEEEDNAD EQEQEHEEES LISGLYHEAG DYSNGSSSWS YRDIEAGYDF DRVVSTSPQP YQSQSFYPES RHSPSTNHHS
801: IEMELIYDLR GHMELLYNEI SELRKSIKGC MEMQIELQQS MKQEVQTVKK EEKKSNNRTP KKGNCCICYE MKVDSVLYRC GHMCTCLKCA NELQWNSGKC
901: PICRAKIEDV VRVYVDG

Best Arabidopsis Sequence Match ( AT2G34920.1 )
(BLAST)

001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STLQLEMSEL RDSVKTCLDV NASLQKSVHL ENPFKRKCCV
601: CNETQVETLL YRCGHMCTCL RCANELQYNG GKCPICHAKI LDVVRVFVDS RT

Arabidopsis Description

EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.